miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30747 3' -61.6 NC_006552.1 + 21148 0.67 0.400153
Target:  5'- -aCGGGCGGCgGCGacgcgaUAGgcgcaucCGGCCGCg -3'
miRNA:   3'- cgGUCCGUCG-CGCg-----GUCaa-----GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 4250 0.67 0.397545
Target:  5'- cCCAGGCAG-GCGCaUAGUUucccgcuuuggcggUGGuuGCg -3'
miRNA:   3'- cGGUCCGUCgCGCG-GUCAA--------------GCCggCG- -5'
30747 3' -61.6 NC_006552.1 + 4807 0.67 0.358134
Target:  5'- aCCugcGGCGGgggcgaugcgcaCGCGCaCAGggCGGUCGCg -3'
miRNA:   3'- cGGu--CCGUC------------GCGCG-GUCaaGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 26201 0.67 0.358134
Target:  5'- gGCCAGGU-GCuuGCCGG-UCGGCauggGCg -3'
miRNA:   3'- -CGGUCCGuCGcgCGGUCaAGCCGg---CG- -5'
30747 3' -61.6 NC_006552.1 + 7900 0.67 0.365465
Target:  5'- cGCCAGGaaaCGCGCCAcgcaucuGcUCGGCCa- -3'
miRNA:   3'- -CGGUCCgucGCGCGGU-------CaAGCCGGcg -5'
30747 3' -61.6 NC_006552.1 + 29739 0.67 0.366286
Target:  5'- cCCGGGCAuCGCGCgAGagcagCGGUgGCu -3'
miRNA:   3'- cGGUCCGUcGCGCGgUCaa---GCCGgCG- -5'
30747 3' -61.6 NC_006552.1 + 5075 0.67 0.382125
Target:  5'- gGCCAGcCAGCGCuaucgcaGCCAGaaCGG-CGCc -3'
miRNA:   3'- -CGGUCcGUCGCG-------CGGUCaaGCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 17643 0.67 0.382971
Target:  5'- aGCCAGGCgcuGGCGauCgAGUUCguuGGCgGCg -3'
miRNA:   3'- -CGGUCCG---UCGCgcGgUCAAG---CCGgCG- -5'
30747 3' -61.6 NC_006552.1 + 35426 0.67 0.382971
Target:  5'- aGCCuGGGCcgcAGCcuucGCGUCuugcgcGUUCGGCUGCu -3'
miRNA:   3'- -CGG-UCCG---UCG----CGCGGu-----CAAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 64159 0.67 0.391501
Target:  5'- cGCCcuGGCGcacGCGcCGaCCAGUUCGGCa-- -3'
miRNA:   3'- -CGGu-CCGU---CGC-GC-GGUCAAGCCGgcg -5'
30747 3' -61.6 NC_006552.1 + 61876 0.67 0.391501
Target:  5'- cCCAGGCuGaauuGCGCCGGcugCGGaCGCu -3'
miRNA:   3'- cGGUCCGuCg---CGCGGUCaa-GCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 43893 0.67 0.391501
Target:  5'- aCCAGGCGGUGCuuGCgAacucccgCGGCUGCu -3'
miRNA:   3'- cGGUCCGUCGCG--CGgUcaa----GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 58912 0.67 0.391501
Target:  5'- cUCGGGCAGCcagcaGCGCCuuGUaaCGGCCaGCc -3'
miRNA:   3'- cGGUCCGUCG-----CGCGGu-CAa-GCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 24937 0.67 0.390642
Target:  5'- cGCUGGGCAGaucccaaCGCGCuuCAGgcUGGCCaGCu -3'
miRNA:   3'- -CGGUCCGUC-------GCGCG--GUCaaGCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 47705 0.68 0.350109
Target:  5'- aGCCggAGGUGGCGCGUaacgcCGGCCaGCa -3'
miRNA:   3'- -CGG--UCCGUCGCGCGgucaaGCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 25297 0.68 0.350109
Target:  5'- aCCGGGUAGCgGUGUCGG-UCGGCguccaaGCu -3'
miRNA:   3'- cGGUCCGUCG-CGCGGUCaAGCCGg-----CG- -5'
30747 3' -61.6 NC_006552.1 + 36273 0.68 0.334446
Target:  5'- uCCuGGCAGCcUGuUCAGgugUCGGCCGUc -3'
miRNA:   3'- cGGuCCGUCGcGC-GGUCa--AGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 20500 0.68 0.334446
Target:  5'- aCCAGGauguCGCGguUCAGaUUCGGCCGCc -3'
miRNA:   3'- cGGUCCguc-GCGC--GGUC-AAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 15463 0.68 0.319303
Target:  5'- uGCCGGcGcCAGCGauacaGCCGGUugugCGGCUuGCg -3'
miRNA:   3'- -CGGUC-C-GUCGCg----CGGUCAa---GCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 58628 0.68 0.326053
Target:  5'- cGCCGGGCAGacugaacCGCGaCCGGgcgaCGaGCCGa -3'
miRNA:   3'- -CGGUCCGUC-------GCGC-GGUCaa--GC-CGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.