Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 32702 | 0.68 | 0.327567 |
Target: 5'- cGCCGGcCGGCGCgggGCCGGUggagcgcucgaacaGGUCGCg -3' miRNA: 3'- -CGGUCcGUCGCG---CGGUCAag------------CCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 11892 | 0.68 | 0.32681 |
Target: 5'- uCCAGGC-GCGCgGCCAauuucUUCaGGCCGUc -3' miRNA: 3'- cGGUCCGuCGCG-CGGUc----AAG-CCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 14873 | 0.68 | 0.30468 |
Target: 5'- cGCCAGGU-GC-UGCCGGaUCGGCacCGCu -3' miRNA: 3'- -CGGUCCGuCGcGCGGUCaAGCCG--GCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 20442 | 0.68 | 0.309739 |
Target: 5'- gGCCAGGCccugcugcacGGCgaaGCGCaGGUUCucgauuucccagguGGCCGCu -3' miRNA: 3'- -CGGUCCG----------UCG---CGCGgUCAAG--------------CCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 38886 | 0.68 | 0.311196 |
Target: 5'- -gCAGGCAGUGCggucccaGCCAGUaggagCGG-CGCa -3' miRNA: 3'- cgGUCCGUCGCG-------CGGUCAa----GCCgGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 26342 | 0.68 | 0.311926 |
Target: 5'- cGUCAGGUAgaggcGCGCGCCGGUcacacUGGCauccaaGCa -3' miRNA: 3'- -CGGUCCGU-----CGCGCGGUCAa----GCCGg-----CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 61184 | 0.68 | 0.311926 |
Target: 5'- cGCUcGGCaAGCcuGCGCCGauaUCGGCUGCu -3' miRNA: 3'- -CGGuCCG-UCG--CGCGGUca-AGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 58628 | 0.68 | 0.326053 |
Target: 5'- cGCCGGGCAGacugaacCGCGaCCGGgcgaCGaGCCGa -3' miRNA: 3'- -CGGUCCGUC-------GCGC-GGUCaa--GC-CGGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 15463 | 0.68 | 0.319303 |
Target: 5'- uGCCGGcGcCAGCGauacaGCCGGUugugCGGCUuGCg -3' miRNA: 3'- -CGGUC-C-GUCGCg----CGGUCAa---GCCGG-CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 53583 | 0.68 | 0.319303 |
Target: 5'- aGUCGauGUGGCGCcgGCCAGUUCGguGCCGCc -3' miRNA: 3'- -CGGUc-CGUCGCG--CGGUCAAGC--CGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 7141 | 0.69 | 0.27699 |
Target: 5'- cCCAGGCcaucgacaGGCGCGCCAcgcugUUGGaCGCa -3' miRNA: 3'- cGGUCCG--------UCGCGCGGUca---AGCCgGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 36114 | 0.69 | 0.289885 |
Target: 5'- cGCCcuGCuGCGCGCCAGUguucuguUCGGUguUGUc -3' miRNA: 3'- -CGGucCGuCGCGCGGUCA-------AGCCG--GCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 22316 | 0.69 | 0.297563 |
Target: 5'- aCCAGcaGGUGCGCCGG-UCGGUCGa -3' miRNA: 3'- cGGUCcgUCGCGCGGUCaAGCCGGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 3251 | 0.69 | 0.283719 |
Target: 5'- cGCC--GCAGUGCGCCGGa--GGUCGUu -3' miRNA: 3'- -CGGucCGUCGCGCGGUCaagCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 12938 | 0.69 | 0.263915 |
Target: 5'- aGCUcGGcCAGCGCGCUGGccUUGGCCugGCg -3' miRNA: 3'- -CGGuCC-GUCGCGCGGUCa-AGCCGG--CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 38238 | 0.69 | 0.269735 |
Target: 5'- -aCAGGUAGgCgGCGCCGGUcugcggaUCGcGCUGCg -3' miRNA: 3'- cgGUCCGUC-G-CGCGGUCA-------AGC-CGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 56267 | 0.69 | 0.27699 |
Target: 5'- aGCCaAGGcCGGCGUccGCCAGUUC-GCCa- -3' miRNA: 3'- -CGG-UCC-GUCGCG--CGGUCAAGcCGGcg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 51989 | 0.7 | 0.253819 |
Target: 5'- cGCCAGcagcgagagcuugccGCGGCGCGCCAGcaacUC-GCCGa -3' miRNA: 3'- -CGGUC---------------CGUCGCGCGGUCa---AGcCGGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 50165 | 0.7 | 0.239273 |
Target: 5'- -gCAGGCGuacuGCGCGCUGGUcggcuaUCuGCCGCa -3' miRNA: 3'- cgGUCCGU----CGCGCGGUCA------AGcCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 33747 | 0.7 | 0.257567 |
Target: 5'- cGCCAGcGCGGCgGCGgCAuugcuGUUgagcagaacgcCGGCCGCg -3' miRNA: 3'- -CGGUC-CGUCG-CGCgGU-----CAA-----------GCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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