miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30747 3' -61.6 NC_006552.1 + 31402 0.7 0.233421
Target:  5'- cGUC-GGCGGCGcCGCCAGUggUGGUcuuCGCg -3'
miRNA:   3'- -CGGuCCGUCGC-GCGGUCAa-GCCG---GCG- -5'
30747 3' -61.6 NC_006552.1 + 49008 0.7 0.233421
Target:  5'- aGCCcGGCGGCGCGagcGUUCaGCCGa -3'
miRNA:   3'- -CGGuCCGUCGCGCgguCAAGcCGGCg -5'
30747 3' -61.6 NC_006552.1 + 26230 0.7 0.233421
Target:  5'- -aCAGGUGGCgaaacuGCGCCGG-UCGGCCcaGCu -3'
miRNA:   3'- cgGUCCGUCG------CGCGGUCaAGCCGG--CG- -5'
30747 3' -61.6 NC_006552.1 + 4732 0.7 0.233421
Target:  5'- gGCCgAGGCGGCGUcuccugcaCCAGcUUCGGCgGUg -3'
miRNA:   3'- -CGG-UCCGUCGCGc-------GGUC-AAGCCGgCG- -5'
30747 3' -61.6 NC_006552.1 + 22316 0.69 0.297563
Target:  5'- aCCAGcaGGUGCGCCGG-UCGGUCGa -3'
miRNA:   3'- cGGUCcgUCGCGCGGUCaAGCCGGCg -5'
30747 3' -61.6 NC_006552.1 + 36114 0.69 0.289885
Target:  5'- cGCCcuGCuGCGCGCCAGUguucuguUCGGUguUGUc -3'
miRNA:   3'- -CGGucCGuCGCGCGGUCA-------AGCCG--GCG- -5'
30747 3' -61.6 NC_006552.1 + 3251 0.69 0.283719
Target:  5'- cGCC--GCAGUGCGCCGGa--GGUCGUu -3'
miRNA:   3'- -CGGucCGUCGCGCGGUCaagCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 7141 0.69 0.27699
Target:  5'- cCCAGGCcaucgacaGGCGCGCCAcgcugUUGGaCGCa -3'
miRNA:   3'- cGGUCCG--------UCGCGCGGUca---AGCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 56267 0.69 0.27699
Target:  5'- aGCCaAGGcCGGCGUccGCCAGUUC-GCCa- -3'
miRNA:   3'- -CGG-UCC-GUCGCG--CGGUCAAGcCGGcg -5'
30747 3' -61.6 NC_006552.1 + 38238 0.69 0.269735
Target:  5'- -aCAGGUAGgCgGCGCCGGUcugcggaUCGcGCUGCg -3'
miRNA:   3'- cgGUCCGUC-G-CGCGGUCA-------AGC-CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 12938 0.69 0.263915
Target:  5'- aGCUcGGcCAGCGCGCUGGccUUGGCCugGCg -3'
miRNA:   3'- -CGGuCC-GUCGCGCGGUCa-AGCCGG--CG- -5'
30747 3' -61.6 NC_006552.1 + 58628 0.68 0.326053
Target:  5'- cGCCGGGCAGacugaacCGCGaCCGGgcgaCGaGCCGa -3'
miRNA:   3'- -CGGUCCGUC-------GCGC-GGUCaa--GC-CGGCg -5'
30747 3' -61.6 NC_006552.1 + 15463 0.68 0.319303
Target:  5'- uGCCGGcGcCAGCGauacaGCCGGUugugCGGCUuGCg -3'
miRNA:   3'- -CGGUC-C-GUCGCg----CGGUCAa---GCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 5603 0.68 0.319303
Target:  5'- gGCCAGGCugacggucAGCGCGgCaaccagcacgcGGUUaCGGCUGUu -3'
miRNA:   3'- -CGGUCCG--------UCGCGCgG-----------UCAA-GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 53583 0.68 0.319303
Target:  5'- aGUCGauGUGGCGCcgGCCAGUUCGguGCCGCc -3'
miRNA:   3'- -CGGUc-CGUCGCG--CGGUCAAGC--CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 61184 0.68 0.311926
Target:  5'- cGCUcGGCaAGCcuGCGCCGauaUCGGCUGCu -3'
miRNA:   3'- -CGGuCCG-UCG--CGCGGUca-AGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 26342 0.68 0.311926
Target:  5'- cGUCAGGUAgaggcGCGCGCCGGUcacacUGGCauccaaGCa -3'
miRNA:   3'- -CGGUCCGU-----CGCGCGGUCAa----GCCGg-----CG- -5'
30747 3' -61.6 NC_006552.1 + 38886 0.68 0.311196
Target:  5'- -gCAGGCAGUGCggucccaGCCAGUaggagCGG-CGCa -3'
miRNA:   3'- cgGUCCGUCGCG-------CGGUCAa----GCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 20442 0.68 0.309739
Target:  5'- gGCCAGGCccugcugcacGGCgaaGCGCaGGUUCucgauuucccagguGGCCGCu -3'
miRNA:   3'- -CGGUCCG----------UCG---CGCGgUCAAG--------------CCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 11892 0.68 0.32681
Target:  5'- uCCAGGC-GCGCgGCCAauuucUUCaGGCCGUc -3'
miRNA:   3'- cGGUCCGuCGCG-CGGUc----AAG-CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.