Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 28028 | 0.72 | 0.172212 |
Target: 5'- ---cGGCGGCGCGCCGGUcUUGGUCa- -3' miRNA: 3'- cgguCCGUCGCGCGGUCA-AGCCGGcg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 29304 | 0.72 | 0.172212 |
Target: 5'- cCCAcGGCGGCgGCGCaauGUUgcCGGCCGCc -3' miRNA: 3'- cGGU-CCGUCG-CGCGgu-CAA--GCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 29739 | 0.67 | 0.366286 |
Target: 5'- cCCGGGCAuCGCGCgAGagcagCGGUgGCu -3' miRNA: 3'- cGGUCCGUcGCGCGgUCaa---GCCGgCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 30581 | 0.66 | 0.445188 |
Target: 5'- cGCCGGgauugguaGCAGCGuCGCacuaucauCGGUacUCGGCCaGCu -3' miRNA: 3'- -CGGUC--------CGUCGC-GCG--------GUCA--AGCCGG-CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 31402 | 0.7 | 0.233421 |
Target: 5'- cGUC-GGCGGCGcCGCCAGUggUGGUcuuCGCg -3' miRNA: 3'- -CGGuCCGUCGC-GCGGUCAa-GCCG---GCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 31901 | 0.66 | 0.445188 |
Target: 5'- gGCCAGcGCGGCGCG---GUUCGGaUCGa -3' miRNA: 3'- -CGGUC-CGUCGCGCgguCAAGCC-GGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 32142 | 0.72 | 0.183183 |
Target: 5'- uGCCGGuGCAuGCGCGCCAuuccggcagcuccacGUccagcaccUCGGCCGa -3' miRNA: 3'- -CGGUC-CGU-CGCGCGGU---------------CA--------AGCCGGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 32702 | 0.68 | 0.327567 |
Target: 5'- cGCCGGcCGGCGCgggGCCGGUggagcgcucgaacaGGUCGCg -3' miRNA: 3'- -CGGUCcGUCGCG---CGGUCAag------------CCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 33747 | 0.7 | 0.257567 |
Target: 5'- cGCCAGcGCGGCgGCGgCAuugcuGUUgagcagaacgcCGGCCGCg -3' miRNA: 3'- -CGGUC-CGUCG-CGCgGU-----CAA-----------GCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 34148 | 0.73 | 0.155227 |
Target: 5'- cCCAGGCu-UGCGCCAGagccUGGCCGCc -3' miRNA: 3'- cGGUCCGucGCGCGGUCaa--GCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 34366 | 0.66 | 0.408927 |
Target: 5'- uGCUuGGCGuucgacgcGCGCGCCAGUgcagCaGCCuGCc -3' miRNA: 3'- -CGGuCCGU--------CGCGCGGUCAa---GcCGG-CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 35426 | 0.67 | 0.382971 |
Target: 5'- aGCCuGGGCcgcAGCcuucGCGUCuugcgcGUUCGGCUGCu -3' miRNA: 3'- -CGG-UCCG---UCG----CGCGGu-----CAAGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 36114 | 0.69 | 0.289885 |
Target: 5'- cGCCcuGCuGCGCGCCAGUguucuguUCGGUguUGUc -3' miRNA: 3'- -CGGucCGuCGCGCGGUCA-------AGCCG--GCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 36273 | 0.68 | 0.334446 |
Target: 5'- uCCuGGCAGCcUGuUCAGgugUCGGCCGUc -3' miRNA: 3'- cGGuCCGUCGcGC-GGUCa--AGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 38238 | 0.69 | 0.269735 |
Target: 5'- -aCAGGUAGgCgGCGCCGGUcugcggaUCGcGCUGCg -3' miRNA: 3'- cgGUCCGUC-G-CGCGGUCA-------AGC-CGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 38365 | 0.67 | 0.400153 |
Target: 5'- uGCCAGcaGCAGUuCGCCcaccagGGUcCGGCCGg -3' miRNA: 3'- -CGGUC--CGUCGcGCGG------UCAaGCCGGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 38886 | 0.68 | 0.311196 |
Target: 5'- -gCAGGCAGUGCggucccaGCCAGUaggagCGG-CGCa -3' miRNA: 3'- cgGUCCGUCGCG-------CGGUCAa----GCCgGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 38961 | 0.7 | 0.245248 |
Target: 5'- cGCCAGcGCGauguuGUGCGCCAgguuGUUCgGGUCGUa -3' miRNA: 3'- -CGGUC-CGU-----CGCGCGGU----CAAG-CCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 41408 | 1.13 | 0.000151 |
Target: 5'- aGCCAGGCAGCGCGCCAGUUCGGCCGCg -3' miRNA: 3'- -CGGUCCGUCGCGCGGUCAAGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 41979 | 0.66 | 0.41247 |
Target: 5'- aGCCGuggcaguaccGGCAGCaaccgaugcguaacuGCGUCAGUUCGcgugcaucuGCCGUc -3' miRNA: 3'- -CGGU----------CCGUCG---------------CGCGGUCAAGC---------CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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