miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30747 3' -61.6 NC_006552.1 + 43893 0.67 0.391501
Target:  5'- aCCAGGCGGUGCuuGCgAacucccgCGGCUGCu -3'
miRNA:   3'- cGGUCCGUCGCG--CGgUcaa----GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 41979 0.66 0.41247
Target:  5'- aGCCGuggcaguaccGGCAGCaaccgaugcguaacuGCGUCAGUUCGcgugcaucuGCCGUc -3'
miRNA:   3'- -CGGU----------CCGUCG---------------CGCGGUCAAGC---------CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 41408 1.13 0.000151
Target:  5'- aGCCAGGCAGCGCGCCAGUUCGGCCGCg -3'
miRNA:   3'- -CGGUCCGUCGCGCGGUCAAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 38961 0.7 0.245248
Target:  5'- cGCCAGcGCGauguuGUGCGCCAgguuGUUCgGGUCGUa -3'
miRNA:   3'- -CGGUC-CGU-----CGCGCGGU----CAAG-CCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 38886 0.68 0.311196
Target:  5'- -gCAGGCAGUGCggucccaGCCAGUaggagCGG-CGCa -3'
miRNA:   3'- cgGUCCGUCGCG-------CGGUCAa----GCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 38365 0.67 0.400153
Target:  5'- uGCCAGcaGCAGUuCGCCcaccagGGUcCGGCCGg -3'
miRNA:   3'- -CGGUC--CGUCGcGCGG------UCAaGCCGGCg -5'
30747 3' -61.6 NC_006552.1 + 38238 0.69 0.269735
Target:  5'- -aCAGGUAGgCgGCGCCGGUcugcggaUCGcGCUGCg -3'
miRNA:   3'- cgGUCCGUC-G-CGCGGUCA-------AGC-CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 36273 0.68 0.334446
Target:  5'- uCCuGGCAGCcUGuUCAGgugUCGGCCGUc -3'
miRNA:   3'- cGGuCCGUCGcGC-GGUCa--AGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 36114 0.69 0.289885
Target:  5'- cGCCcuGCuGCGCGCCAGUguucuguUCGGUguUGUc -3'
miRNA:   3'- -CGGucCGuCGCGCGGUCA-------AGCCG--GCG- -5'
30747 3' -61.6 NC_006552.1 + 35426 0.67 0.382971
Target:  5'- aGCCuGGGCcgcAGCcuucGCGUCuugcgcGUUCGGCUGCu -3'
miRNA:   3'- -CGG-UCCG---UCG----CGCGGu-----CAAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 34366 0.66 0.408927
Target:  5'- uGCUuGGCGuucgacgcGCGCGCCAGUgcagCaGCCuGCc -3'
miRNA:   3'- -CGGuCCGU--------CGCGCGGUCAa---GcCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 34148 0.73 0.155227
Target:  5'- cCCAGGCu-UGCGCCAGagccUGGCCGCc -3'
miRNA:   3'- cGGUCCGucGCGCGGUCaa--GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 33747 0.7 0.257567
Target:  5'- cGCCAGcGCGGCgGCGgCAuugcuGUUgagcagaacgcCGGCCGCg -3'
miRNA:   3'- -CGGUC-CGUCG-CGCgGU-----CAA-----------GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 32702 0.68 0.327567
Target:  5'- cGCCGGcCGGCGCgggGCCGGUggagcgcucgaacaGGUCGCg -3'
miRNA:   3'- -CGGUCcGUCGCG---CGGUCAag------------CCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 32142 0.72 0.183183
Target:  5'- uGCCGGuGCAuGCGCGCCAuuccggcagcuccacGUccagcaccUCGGCCGa -3'
miRNA:   3'- -CGGUC-CGU-CGCGCGGU---------------CA--------AGCCGGCg -5'
30747 3' -61.6 NC_006552.1 + 31901 0.66 0.445188
Target:  5'- gGCCAGcGCGGCGCG---GUUCGGaUCGa -3'
miRNA:   3'- -CGGUC-CGUCGCGCgguCAAGCC-GGCg -5'
30747 3' -61.6 NC_006552.1 + 31402 0.7 0.233421
Target:  5'- cGUC-GGCGGCGcCGCCAGUggUGGUcuuCGCg -3'
miRNA:   3'- -CGGuCCGUCGC-GCGGUCAa-GCCG---GCG- -5'
30747 3' -61.6 NC_006552.1 + 30581 0.66 0.445188
Target:  5'- cGCCGGgauugguaGCAGCGuCGCacuaucauCGGUacUCGGCCaGCu -3'
miRNA:   3'- -CGGUC--------CGUCGC-GCG--------GUCA--AGCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 29739 0.67 0.366286
Target:  5'- cCCGGGCAuCGCGCgAGagcagCGGUgGCu -3'
miRNA:   3'- cGGUCCGUcGCGCGgUCaa---GCCGgCG- -5'
30747 3' -61.6 NC_006552.1 + 29304 0.72 0.172212
Target:  5'- cCCAcGGCGGCgGCGCaauGUUgcCGGCCGCc -3'
miRNA:   3'- cGGU-CCGUCG-CGCGgu-CAA--GCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.