Results 61 - 80 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 12938 | 0.69 | 0.263915 |
Target: 5'- aGCUcGGcCAGCGCGCUGGccUUGGCCugGCg -3' miRNA: 3'- -CGGuCC-GUCGCGCGGUCa-AGCCGG--CG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 12388 | 0.66 | 0.442406 |
Target: 5'- gGCCugcgcgucGGCGGUGuCGCCugucaccagcuuacGGaaugcUUCGGCCGCc -3' miRNA: 3'- -CGGu-------CCGUCGC-GCGG--------------UC-----AAGCCGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 12172 | 0.75 | 0.113025 |
Target: 5'- gGCCAGGUuguucaugguGGCG-GCCAGUgccuugUCGGaCCGCg -3' miRNA: 3'- -CGGUCCG----------UCGCgCGGUCA------AGCC-GGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 11930 | 0.68 | 0.350109 |
Target: 5'- cGCCAucUGGCGCGCCAGgcucgcuaggUCGGagCGCa -3' miRNA: 3'- -CGGUccGUCGCGCGGUCa---------AGCCg-GCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 11892 | 0.68 | 0.32681 |
Target: 5'- uCCAGGC-GCGCgGCCAauuucUUCaGGCCGUc -3' miRNA: 3'- cGGUCCGuCGCG-CGGUc----AAG-CCGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 11048 | 0.73 | 0.155227 |
Target: 5'- aCCAGGCGGC-CGCCGGgcuucagcaGGCUGUa -3' miRNA: 3'- cGGUCCGUCGcGCGGUCaag------CCGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 10840 | 0.77 | 0.073288 |
Target: 5'- cGCCGGGCugcGGCGCuGCCGacucUUCGGCUGCc -3' miRNA: 3'- -CGGUCCG---UCGCG-CGGUc---AAGCCGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 8645 | 0.75 | 0.118591 |
Target: 5'- cGCCAaguuuccaacuucGGCAGCaguuucgGCGCCAGaUCaGCCGCa -3' miRNA: 3'- -CGGU-------------CCGUCG-------CGCGGUCaAGcCGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 8140 | 0.72 | 0.182714 |
Target: 5'- cGCCAGGUGGuCGCGCaguaucgCGGcccccuccugcgcaUCGGCCGCg -3' miRNA: 3'- -CGGUCCGUC-GCGCG-------GUCa-------------AGCCGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 7900 | 0.67 | 0.365465 |
Target: 5'- cGCCAGGaaaCGCGCCAcgcaucuGcUCGGCCa- -3' miRNA: 3'- -CGGUCCgucGCGCGGU-------CaAGCCGGcg -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 7141 | 0.69 | 0.27699 |
Target: 5'- cCCAGGCcaucgacaGGCGCGCCAcgcugUUGGaCGCa -3' miRNA: 3'- cGGUCCG--------UCGCGCGGUca---AGCCgGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 5603 | 0.68 | 0.319303 |
Target: 5'- gGCCAGGCugacggucAGCGCGgCaaccagcacgcGGUUaCGGCUGUu -3' miRNA: 3'- -CGGUCCG--------UCGCGCgG-----------UCAA-GCCGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 5427 | 0.81 | 0.03991 |
Target: 5'- aUCAGGCuGCGCGCCAGUuguUCG-CCGCg -3' miRNA: 3'- cGGUCCGuCGCGCGGUCA---AGCcGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 5075 | 0.67 | 0.382125 |
Target: 5'- gGCCAGcCAGCGCuaucgcaGCCAGaaCGG-CGCc -3' miRNA: 3'- -CGGUCcGUCGCG-------CGGUCaaGCCgGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 4941 | 0.66 | 0.435953 |
Target: 5'- uGUCGcGCuGCGCgGUCAGcUCGGCCaGCu -3' miRNA: 3'- -CGGUcCGuCGCG-CGGUCaAGCCGG-CG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 4807 | 0.67 | 0.358134 |
Target: 5'- aCCugcGGCGGgggcgaugcgcaCGCGCaCAGggCGGUCGCg -3' miRNA: 3'- cGGu--CCGUC------------GCGCG-GUCaaGCCGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 4732 | 0.7 | 0.233421 |
Target: 5'- gGCCgAGGCGGCGUcuccugcaCCAGcUUCGGCgGUg -3' miRNA: 3'- -CGG-UCCGUCGCGc-------GGUC-AAGCCGgCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 4250 | 0.67 | 0.397545 |
Target: 5'- cCCAGGCAG-GCGCaUAGUUucccgcuuuggcggUGGuuGCg -3' miRNA: 3'- cGGUCCGUCgCGCG-GUCAA--------------GCCggCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 3251 | 0.69 | 0.283719 |
Target: 5'- cGCC--GCAGUGCGCCGGa--GGUCGUu -3' miRNA: 3'- -CGGucCGUCGCGCGGUCaagCCGGCG- -5' |
|||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 2050 | 0.72 | 0.181313 |
Target: 5'- -aCAGGCgcuugAGCGCGCCGGcgucgugcgCGGCCuGCu -3' miRNA: 3'- cgGUCCG-----UCGCGCGGUCaa-------GCCGG-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home