Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 12172 | 0.75 | 0.113025 |
Target: 5'- gGCCAGGUuguucaugguGGCG-GCCAGUgccuugUCGGaCCGCg -3' miRNA: 3'- -CGGUCCG----------UCGCgCGGUCA------AGCC-GGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 26537 | 0.76 | 0.086311 |
Target: 5'- cGCCGGGguGUccaGCGUCAGgcgcUCGGCCuGCg -3' miRNA: 3'- -CGGUCCguCG---CGCGGUCa---AGCCGG-CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 10840 | 0.77 | 0.073288 |
Target: 5'- cGCCGGGCugcGGCGCuGCCGacucUUCGGCUGCc -3' miRNA: 3'- -CGGUCCG---UCGCG-CGGUc---AAGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 61373 | 0.79 | 0.057231 |
Target: 5'- aGCCGGGCcauguuuuGGCGCGCCGG--CGGCgGCu -3' miRNA: 3'- -CGGUCCG--------UCGCGCGGUCaaGCCGgCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 5427 | 0.81 | 0.03991 |
Target: 5'- aUCAGGCuGCGCGCCAGUuguUCG-CCGCg -3' miRNA: 3'- cGGUCCGuCGCGCGGUCA---AGCcGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 22890 | 0.71 | 0.195762 |
Target: 5'- cGCCAGGUGGCagguucaGCCAGUU--GCCGCu -3' miRNA: 3'- -CGGUCCGUCGcg-----CGGUCAAgcCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 53994 | 0.71 | 0.200797 |
Target: 5'- gGCCAGGC-GCGUgGCCcuGGcccUGGCCGCg -3' miRNA: 3'- -CGGUCCGuCGCG-CGG--UCaa-GCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 3251 | 0.69 | 0.283719 |
Target: 5'- cGCC--GCAGUGCGCCGGa--GGUCGUu -3' miRNA: 3'- -CGGucCGUCGCGCGGUCaagCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 7141 | 0.69 | 0.27699 |
Target: 5'- cCCAGGCcaucgacaGGCGCGCCAcgcugUUGGaCGCa -3' miRNA: 3'- cGGUCCG--------UCGCGCGGUca---AGCCgGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 56267 | 0.69 | 0.27699 |
Target: 5'- aGCCaAGGcCGGCGUccGCCAGUUC-GCCa- -3' miRNA: 3'- -CGG-UCC-GUCGCG--CGGUCAAGcCGGcg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 38238 | 0.69 | 0.269735 |
Target: 5'- -aCAGGUAGgCgGCGCCGGUcugcggaUCGcGCUGCg -3' miRNA: 3'- cgGUCCGUC-G-CGCGGUCA-------AGC-CGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 12938 | 0.69 | 0.263915 |
Target: 5'- aGCUcGGcCAGCGCGCUGGccUUGGCCugGCg -3' miRNA: 3'- -CGGuCC-GUCGCGCGGUCa-AGCCGG--CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 33747 | 0.7 | 0.257567 |
Target: 5'- cGCCAGcGCGGCgGCGgCAuugcuGUUgagcagaacgcCGGCCGCg -3' miRNA: 3'- -CGGUC-CGUCG-CGCgGU-----CAA-----------GCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 51989 | 0.7 | 0.253819 |
Target: 5'- cGCCAGcagcgagagcuugccGCGGCGCGCCAGcaacUC-GCCGa -3' miRNA: 3'- -CGGUC---------------CGUCGCGCGGUCa---AGcCGGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 38961 | 0.7 | 0.245248 |
Target: 5'- cGCCAGcGCGauguuGUGCGCCAgguuGUUCgGGUCGUa -3' miRNA: 3'- -CGGUC-CGU-----CGCGCGGU----CAAG-CCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 50165 | 0.7 | 0.239273 |
Target: 5'- -gCAGGCGuacuGCGCGCUGGUcggcuaUCuGCCGCa -3' miRNA: 3'- cgGUCCGU----CGCGCGGUCA------AGcCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 31402 | 0.7 | 0.233421 |
Target: 5'- cGUC-GGCGGCGcCGCCAGUggUGGUcuuCGCg -3' miRNA: 3'- -CGGuCCGUCGC-GCGGUCAa-GCCG---GCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 49008 | 0.7 | 0.233421 |
Target: 5'- aGCCcGGCGGCGCGagcGUUCaGCCGa -3' miRNA: 3'- -CGGuCCGUCGCGCgguCAAGcCGGCg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 26230 | 0.7 | 0.233421 |
Target: 5'- -aCAGGUGGCgaaacuGCGCCGG-UCGGCCcaGCu -3' miRNA: 3'- cgGUCCGUCG------CGCGGUCaAGCCGG--CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 4732 | 0.7 | 0.233421 |
Target: 5'- gGCCgAGGCGGCGUcuccugcaCCAGcUUCGGCgGUg -3' miRNA: 3'- -CGG-UCCGUCGCGc-------GGUC-AAGCCGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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