Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30747 | 3' | -61.6 | NC_006552.1 | + | 64159 | 0.67 | 0.391501 |
Target: 5'- cGCCcuGGCGcacGCGcCGaCCAGUUCGGCa-- -3' miRNA: 3'- -CGGu-CCGU---CGC-GC-GGUCAAGCCGgcg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 61876 | 0.67 | 0.391501 |
Target: 5'- cCCAGGCuGaauuGCGCCGGcugCGGaCGCu -3' miRNA: 3'- cGGUCCGuCg---CGCGGUCaa-GCCgGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 43893 | 0.67 | 0.391501 |
Target: 5'- aCCAGGCGGUGCuuGCgAacucccgCGGCUGCu -3' miRNA: 3'- cGGUCCGUCGCG--CGgUcaa----GCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 58912 | 0.67 | 0.391501 |
Target: 5'- cUCGGGCAGCcagcaGCGCCuuGUaaCGGCCaGCc -3' miRNA: 3'- cGGUCCGUCG-----CGCGGu-CAa-GCCGG-CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 24937 | 0.67 | 0.390642 |
Target: 5'- cGCUGGGCAGaucccaaCGCGCuuCAGgcUGGCCaGCu -3' miRNA: 3'- -CGGUCCGUC-------GCGCG--GUCaaGCCGG-CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 20265 | 0.67 | 0.386368 |
Target: 5'- aGCCGcauccagcuuggugcGGUAGaccuGCGCCAGcgUCucgaaGGCCGCg -3' miRNA: 3'- -CGGU---------------CCGUCg---CGCGGUCa-AG-----CCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 35426 | 0.67 | 0.382971 |
Target: 5'- aGCCuGGGCcgcAGCcuucGCGUCuugcgcGUUCGGCUGCu -3' miRNA: 3'- -CGG-UCCG---UCG----CGCGGu-----CAAGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 17643 | 0.67 | 0.382971 |
Target: 5'- aGCCAGGCgcuGGCGauCgAGUUCguuGGCgGCg -3' miRNA: 3'- -CGGUCCG---UCGCgcGgUCAAG---CCGgCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 5075 | 0.67 | 0.382125 |
Target: 5'- gGCCAGcCAGCGCuaucgcaGCCAGaaCGG-CGCc -3' miRNA: 3'- -CGGUCcGUCGCG-------CGGUCaaGCCgGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 13832 | 0.67 | 0.374565 |
Target: 5'- uGCCGGcGCgcacguucaucaGGCGCcgguacuggGCCAGguaaUCGGcCCGCa -3' miRNA: 3'- -CGGUC-CG------------UCGCG---------CGGUCa---AGCC-GGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 29739 | 0.67 | 0.366286 |
Target: 5'- cCCGGGCAuCGCGCgAGagcagCGGUgGCu -3' miRNA: 3'- cGGUCCGUcGCGCGgUCaa---GCCGgCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 7900 | 0.67 | 0.365465 |
Target: 5'- cGCCAGGaaaCGCGCCAcgcaucuGcUCGGCCa- -3' miRNA: 3'- -CGGUCCgucGCGCGGU-------CaAGCCGGcg -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 26201 | 0.67 | 0.358134 |
Target: 5'- gGCCAGGU-GCuuGCCGG-UCGGCauggGCg -3' miRNA: 3'- -CGGUCCGuCGcgCGGUCaAGCCGg---CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 4807 | 0.67 | 0.358134 |
Target: 5'- aCCugcGGCGGgggcgaugcgcaCGCGCaCAGggCGGUCGCg -3' miRNA: 3'- cGGu--CCGUC------------GCGCG-GUCaaGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 11930 | 0.68 | 0.350109 |
Target: 5'- cGCCAucUGGCGCGCCAGgcucgcuaggUCGGagCGCa -3' miRNA: 3'- -CGGUccGUCGCGCGGUCa---------AGCCg-GCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 47705 | 0.68 | 0.350109 |
Target: 5'- aGCCggAGGUGGCGCGUaacgcCGGCCaGCa -3' miRNA: 3'- -CGG--UCCGUCGCGCGgucaaGCCGG-CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 25297 | 0.68 | 0.350109 |
Target: 5'- aCCGGGUAGCgGUGUCGG-UCGGCguccaaGCu -3' miRNA: 3'- cGGUCCGUCG-CGCGGUCaAGCCGg-----CG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 36273 | 0.68 | 0.334446 |
Target: 5'- uCCuGGCAGCcUGuUCAGgugUCGGCCGUc -3' miRNA: 3'- cGGuCCGUCGcGC-GGUCa--AGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 20500 | 0.68 | 0.334446 |
Target: 5'- aCCAGGauguCGCGguUCAGaUUCGGCCGCc -3' miRNA: 3'- cGGUCCguc-GCGC--GGUC-AAGCCGGCG- -5' |
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30747 | 3' | -61.6 | NC_006552.1 | + | 32702 | 0.68 | 0.327567 |
Target: 5'- cGCCGGcCGGCGCgggGCCGGUggagcgcucgaacaGGUCGCg -3' miRNA: 3'- -CGGUCcGUCGCG---CGGUCAag------------CCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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