Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30748 | 5' | -52.3 | NC_006552.1 | + | 61114 | 0.66 | 0.895507 |
|
Target: 5'- uCGAGCGgcuGCAGgaCAUCagcgaagagcagGCGUUGGCa -3' miRNA: 3'- -GCUUGU---CGUCaaGUAGg-----------CGCAACCGa -5' |
|||||||
| 30748 | 5' | -52.3 | NC_006552.1 | + | 38102 | 0.67 | 0.840815 |
|
Target: 5'- aGGACAGCAGccUgGUaCUGCGgcGGCa -3' miRNA: 3'- gCUUGUCGUCa-AgUA-GGCGCaaCCGa -5' |
|||||||
| 30748 | 5' | -52.3 | NC_006552.1 | + | 5967 | 0.69 | 0.752028 |
|
Target: 5'- aGAACGGCaaauccuuacaggGGUUCAgUCCaGCGUUGcGCg -3' miRNA: 3'- gCUUGUCG-------------UCAAGU-AGG-CGCAAC-CGa -5' |
|||||||
| 30748 | 5' | -52.3 | NC_006552.1 | + | 44947 | 0.69 | 0.731888 |
|
Target: 5'- gGAaaGCAGCAGUUCGUCUuguugcucagGCGUcagcaugGGCa -3' miRNA: 3'- gCU--UGUCGUCAAGUAGG----------CGCAa------CCGa -5' |
|||||||
| 30748 | 5' | -52.3 | NC_006552.1 | + | 1209 | 0.73 | 0.512105 |
|
Target: 5'- gCGGACAGCAGU--AUCCGUGagcGGCa -3' miRNA: 3'- -GCUUGUCGUCAagUAGGCGCaa-CCGa -5' |
|||||||
| 30748 | 5' | -52.3 | NC_006552.1 | + | 41016 | 1.09 | 0.002393 |
|
Target: 5'- gCGAACAGCAGUUCAUCCGCGUUGGCUg -3' miRNA: 3'- -GCUUGUCGUCAAGUAGGCGCAACCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home