miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30749 5' -56.8 NC_006552.1 + 11209 0.66 0.698914
Target:  5'- cUCGCgGCGuUCGCCGgaaaGCU-CCACCAc -3'
miRNA:   3'- -AGCG-CGU-AGUGGCac--CGAaGGUGGUc -5'
30749 5' -56.8 NC_006552.1 + 62505 0.66 0.688278
Target:  5'- aUCGCcacGCuUCGCCGccagGGCUUCauCACCAc -3'
miRNA:   3'- -AGCG---CGuAGUGGCa---CCGAAG--GUGGUc -5'
30749 5' -56.8 NC_006552.1 + 3014 0.66 0.677591
Target:  5'- gCGCGCGgagCAgaUCGU-GC-UCCACCAGg -3'
miRNA:   3'- aGCGCGUa--GU--GGCAcCGaAGGUGGUC- -5'
30749 5' -56.8 NC_006552.1 + 9798 0.66 0.677591
Target:  5'- uUCGUGCAgcaaCACUGccGGCgcggUCACCGGg -3'
miRNA:   3'- -AGCGCGUa---GUGGCa-CCGaa--GGUGGUC- -5'
30749 5' -56.8 NC_006552.1 + 16617 0.66 0.67652
Target:  5'- aUC-CGCAUCACCGauacccaguuucuUGGCcaagcuaCCGCCGGc -3'
miRNA:   3'- -AGcGCGUAGUGGC-------------ACCGaa-----GGUGGUC- -5'
30749 5' -56.8 NC_006552.1 + 52175 0.66 0.656102
Target:  5'- aUCGcCGcCAUCGCCGaaGGCcuggCCACCGa -3'
miRNA:   3'- -AGC-GC-GUAGUGGCa-CCGaa--GGUGGUc -5'
30749 5' -56.8 NC_006552.1 + 33422 0.67 0.634528
Target:  5'- -gGCGC-UCGCCGUGGaCgaUCACCuGg -3'
miRNA:   3'- agCGCGuAGUGGCACC-GaaGGUGGuC- -5'
30749 5' -56.8 NC_006552.1 + 42757 0.67 0.602173
Target:  5'- aCGCGCAgCACCa--GCaagucgUCCACCAGg -3'
miRNA:   3'- aGCGCGUaGUGGcacCGa-----AGGUGGUC- -5'
30749 5' -56.8 NC_006552.1 + 22229 0.68 0.570039
Target:  5'- aCGCG-AUCcgcuGCCGUGGCcguaucgaCCACCAGc -3'
miRNA:   3'- aGCGCgUAG----UGGCACCGaa------GGUGGUC- -5'
30749 5' -56.8 NC_006552.1 + 39532 0.68 0.527905
Target:  5'- cCGCccaCGUCGCCGUucGGCgucacCCGCCAGu -3'
miRNA:   3'- aGCGc--GUAGUGGCA--CCGaa---GGUGGUC- -5'
30749 5' -56.8 NC_006552.1 + 22123 0.69 0.497079
Target:  5'- uUCGUcgGC--CACCGUGGCaccgUCCACCGu -3'
miRNA:   3'- -AGCG--CGuaGUGGCACCGa---AGGUGGUc -5'
30749 5' -56.8 NC_006552.1 + 32969 0.69 0.486982
Target:  5'- gCGCGCGUCGgCGUccuGGCUcCCAgcguCCGGg -3'
miRNA:   3'- aGCGCGUAGUgGCA---CCGAaGGU----GGUC- -5'
30749 5' -56.8 NC_006552.1 + 38599 0.69 0.475989
Target:  5'- gCGCGCAccaggcuUCGCCauGUGGUUUUCGuCCAGc -3'
miRNA:   3'- aGCGCGU-------AGUGG--CACCGAAGGU-GGUC- -5'
30749 5' -56.8 NC_006552.1 + 56715 0.76 0.176833
Target:  5'- gUCGCGCGggACCGUGGCgaggaacUgCGCCAGg -3'
miRNA:   3'- -AGCGCGUagUGGCACCGa------AgGUGGUC- -5'
30749 5' -56.8 NC_006552.1 + 22286 0.76 0.176833
Target:  5'- cUCGcCGCAUCGCUGaUGGUUgccugaUCCACCAGc -3'
miRNA:   3'- -AGC-GCGUAGUGGC-ACCGA------AGGUGGUC- -5'
30749 5' -56.8 NC_006552.1 + 40632 1.09 0.000805
Target:  5'- gUCGCGCAUCACCGUGGCUUCCACCAGa -3'
miRNA:   3'- -AGCGCGUAGUGGCACCGAAGGUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.