Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30751 | 3' | -54.3 | NC_006552.1 | + | 22059 | 0.66 | 0.766855 |
|
Target: 5'- cAGUGCUGUCGCUgAUGCGCGcGGCa-- -3' miRNA: 3'- -UUACGGUAGUGA-UAUGCGUcCCGgca -5' |
|||||||
| 30751 | 3' | -54.3 | NC_006552.1 | + | 54127 | 0.66 | 0.756459 |
|
Target: 5'- --gGCgCAUCGuCUGaGCGCcGGGCCGc -3' miRNA: 3'- uuaCG-GUAGU-GAUaUGCGuCCCGGCa -5' |
|||||||
| 30751 | 3' | -54.3 | NC_006552.1 | + | 40439 | 0.67 | 0.691743 |
|
Target: 5'- uAAUGCCGUUGCgcuUGCGCAGcGUCGc -3' miRNA: 3'- -UUACGGUAGUGau-AUGCGUCcCGGCa -5' |
|||||||
| 30751 | 3' | -54.3 | NC_006552.1 | + | 43986 | 0.67 | 0.68068 |
|
Target: 5'- cGAUGCCG-CugUcgGCGacCAGGGCCa- -3' miRNA: 3'- -UUACGGUaGugAuaUGC--GUCCCGGca -5' |
|||||||
| 30751 | 3' | -54.3 | NC_006552.1 | + | 32891 | 0.71 | 0.462733 |
|
Target: 5'- --cGCCGUCGCUcgccaucUGCGCcaccAGGGCCGc -3' miRNA: 3'- uuaCGGUAGUGAu------AUGCG----UCCCGGCa -5' |
|||||||
| 30751 | 3' | -54.3 | NC_006552.1 | + | 32693 | 0.8 | 0.130583 |
|
Target: 5'- uGGUGUCGUCGCcggccgGCGCGGGGCCGg -3' miRNA: 3'- -UUACGGUAGUGaua---UGCGUCCCGGCa -5' |
|||||||
| 30751 | 3' | -54.3 | NC_006552.1 | + | 37477 | 1.04 | 0.002445 |
|
Target: 5'- aAAUGCCAUCACUAUACGCAGGGCCGUu -3' miRNA: 3'- -UUACGGUAGUGAUAUGCGUCCCGGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home