miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30753 5' -57.3 NC_006552.1 + 59630 0.66 0.66177
Target:  5'- aCUCGGGcCGGgaggUGCUGGCUGGGGaCUu -3'
miRNA:   3'- -GAGCUUaGCCa---ACGGUCGGCCUCcGA- -5'
30753 5' -57.3 NC_006552.1 + 8914 0.66 0.647793
Target:  5'- gUCGAAgguaccUCGGUUGCCAacGgCGGAcuugaccuguuccgGGCUg -3'
miRNA:   3'- gAGCUU------AGCCAACGGU--CgGCCU--------------CCGA- -5'
30753 5' -57.3 NC_006552.1 + 50326 0.67 0.597216
Target:  5'- gUCGGcaAUCGGcgUGCUGGCCcuGGuGGCUc -3'
miRNA:   3'- gAGCU--UAGCCa-ACGGUCGG--CCuCCGA- -5'
30753 5' -57.3 NC_006552.1 + 21368 0.67 0.572638
Target:  5'- uUCGAcgCucaGGUcauugauauagccgUGCCGGCCGGucAGGCg -3'
miRNA:   3'- gAGCUuaG---CCA--------------ACGGUCGGCC--UCCGa -5'
30753 5' -57.3 NC_006552.1 + 608 0.69 0.434009
Target:  5'- --aGAAUCGGauugUGCuCAGUCGGcGGCUg -3'
miRNA:   3'- gagCUUAGCCa---ACG-GUCGGCCuCCGA- -5'
30753 5' -57.3 NC_006552.1 + 28727 0.73 0.264888
Target:  5'- gUCGAucugCGGgaaGCCGGCCGGcGGCg -3'
miRNA:   3'- gAGCUua--GCCaa-CGGUCGGCCuCCGa -5'
30753 5' -57.3 NC_006552.1 + 18571 0.73 0.25833
Target:  5'- -cCGAGUCGGUUcGCCAGCC--AGGCc -3'
miRNA:   3'- gaGCUUAGCCAA-CGGUCGGccUCCGa -5'
30753 5' -57.3 NC_006552.1 + 35341 1.07 0.001049
Target:  5'- cCUCGAAUCGGUUGCCAGCCGGAGGCUu -3'
miRNA:   3'- -GAGCUUAGCCAACGGUCGGCCUCCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.