Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30754 | 5' | -51.5 | NC_006552.1 | + | 33498 | 0.66 | 0.942748 |
|
Target: 5'- gGCGUCCuUGGGCagCGCgaacagCGCCUUgcUGGa -3' miRNA: 3'- -CGCAGGuACUUG--GUGaa----GCGGAA--GCC- -5' |
|||||||
| 30754 | 5' | -51.5 | NC_006552.1 | + | 9276 | 0.66 | 0.942748 |
|
Target: 5'- aGUG-CCGUGGuagACCACcaacggcUCGCCcUCGGc -3' miRNA: 3'- -CGCaGGUACU---UGGUGa------AGCGGaAGCC- -5' |
|||||||
| 30754 | 5' | -51.5 | NC_006552.1 | + | 58793 | 0.67 | 0.914767 |
|
Target: 5'- aCGUCCAgcagGcGCCGCacaUGCCUUgGGg -3' miRNA: 3'- cGCAGGUa---CuUGGUGaa-GCGGAAgCC- -5' |
|||||||
| 30754 | 5' | -51.5 | NC_006552.1 | + | 21543 | 0.67 | 0.901644 |
|
Target: 5'- aCGUCCAUG-GCCACcgUGCCaUCa- -3' miRNA: 3'- cGCAGGUACuUGGUGaaGCGGaAGcc -5' |
|||||||
| 30754 | 5' | -51.5 | NC_006552.1 | + | 62451 | 0.67 | 0.894675 |
|
Target: 5'- gGCGUUCcgGcGCCGCUgCGCCUcaccgagUGGa -3' miRNA: 3'- -CGCAGGuaCuUGGUGAaGCGGAa------GCC- -5' |
|||||||
| 30754 | 5' | -51.5 | NC_006552.1 | + | 12007 | 0.67 | 0.890366 |
|
Target: 5'- gGCGUCCAccGGcucGCCGCgguguuucuccugcUCGCCguaagUCGGg -3' miRNA: 3'- -CGCAGGUa-CU---UGGUGa-------------AGCGGa----AGCC- -5' |
|||||||
| 30754 | 5' | -51.5 | NC_006552.1 | + | 9781 | 0.68 | 0.863379 |
|
Target: 5'- uGCuGUCCGUGGAUCAUUUCgugcagcaacacuGCCggcgCGGu -3' miRNA: 3'- -CG-CAGGUACUUGGUGAAG-------------CGGaa--GCC- -5' |
|||||||
| 30754 | 5' | -51.5 | NC_006552.1 | + | 6011 | 0.68 | 0.853431 |
|
Target: 5'- uGCGcUCCAgauccucucgcaucUGcuGCCGCaUCGCUUUCGGu -3' miRNA: 3'- -CGC-AGGU--------------ACu-UGGUGaAGCGGAAGCC- -5' |
|||||||
| 30754 | 5' | -51.5 | NC_006552.1 | + | 34797 | 1.14 | 0.001747 |
|
Target: 5'- gGCGUCCAUGAACCACUUCGCCUUCGGa -3' miRNA: 3'- -CGCAGGUACUUGGUGAAGCGGAAGCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home