miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30755 3' -58.1 NC_006552.1 + 53592 0.66 0.550547
Target:  5'- gGCGCCGGccaGUucGguGCC-GCCGGCUGa -3'
miRNA:   3'- -CGCGGUCa--CGu-CguCGGaCGGUUGAU- -5'
30755 3' -58.1 NC_006552.1 + 20265 0.66 0.550547
Target:  5'- -aGCCgcauccagcuuGGUGCGGUAGaCCUgcGCCAGCg- -3'
miRNA:   3'- cgCGG-----------UCACGUCGUC-GGA--CGGUUGau -5'
30755 3' -58.1 NC_006552.1 + 60145 0.66 0.550547
Target:  5'- gGCGggagaaAGUGCGGCAgaucGCCgGCCAGCa- -3'
miRNA:   3'- -CGCgg----UCACGUCGU----CGGaCGGUUGau -5'
30755 3' -58.1 NC_006552.1 + 33746 0.66 0.539873
Target:  5'- cCGCCAGcGCGGCGGCg-GCauuGCUGu -3'
miRNA:   3'- cGCGGUCaCGUCGUCGgaCGgu-UGAU- -5'
30755 3' -58.1 NC_006552.1 + 29299 0.66 0.539873
Target:  5'- cGCGCCccacgGCGGCGGCgcaaugUUGCCGGCc- -3'
miRNA:   3'- -CGCGGuca--CGUCGUCG------GACGGUUGau -5'
30755 3' -58.1 NC_006552.1 + 62601 0.66 0.536685
Target:  5'- gGCGCCgAGcGCGGCAcguggguugagucuGCCcgcaUGCCAGCg- -3'
miRNA:   3'- -CGCGG-UCaCGUCGU--------------CGG----ACGGUUGau -5'
30755 3' -58.1 NC_006552.1 + 37835 0.66 0.529271
Target:  5'- gGCGCCGGccUGCAuggcacugaauGCGGCCUGCa----- -3'
miRNA:   3'- -CGCGGUC--ACGU-----------CGUCGGACGguugau -5'
30755 3' -58.1 NC_006552.1 + 3569 0.66 0.518745
Target:  5'- aCGCCAgGUGCuGGCcgAGCC-GCCGGCg- -3'
miRNA:   3'- cGCGGU-CACG-UCG--UCGGaCGGUUGau -5'
30755 3' -58.1 NC_006552.1 + 39266 0.66 0.518745
Target:  5'- uGCGaucaGGUGaCAGcCAGCgCUGCCGGCg- -3'
miRNA:   3'- -CGCgg--UCAC-GUC-GUCG-GACGGUUGau -5'
30755 3' -58.1 NC_006552.1 + 16794 0.66 0.518745
Target:  5'- cGCGCCGGcUGCcacAGguGCCaacgcuggaGCCAGCg- -3'
miRNA:   3'- -CGCGGUC-ACG---UCguCGGa--------CGGUUGau -5'
30755 3' -58.1 NC_006552.1 + 9400 0.67 0.497952
Target:  5'- uCGCCccGUGCGGCGcGCUucaUGCCAGCc- -3'
miRNA:   3'- cGCGGu-CACGUCGU-CGG---ACGGUUGau -5'
30755 3' -58.1 NC_006552.1 + 16020 0.67 0.487696
Target:  5'- uGCGCCAcUGUccaCGGCCUGCgCAGCa- -3'
miRNA:   3'- -CGCGGUcACGuc-GUCGGACG-GUUGau -5'
30755 3' -58.1 NC_006552.1 + 15467 0.67 0.48159
Target:  5'- gGCGCCAgcgauacagccgguuGUGCGGCuugcGCCUGCUg---- -3'
miRNA:   3'- -CGCGGU---------------CACGUCGu---CGGACGGuugau -5'
30755 3' -58.1 NC_006552.1 + 15020 0.67 0.457551
Target:  5'- gGCGCCAGUGgcuuCAGCAcGCggggCUGCgCAGCa- -3'
miRNA:   3'- -CGCGGUCAC----GUCGU-CG----GACG-GUUGau -5'
30755 3' -58.1 NC_006552.1 + 26291 0.68 0.438018
Target:  5'- cGCGcCCAGcggGUAGUcGCCgGCCAACa- -3'
miRNA:   3'- -CGC-GGUCa--CGUCGuCGGaCGGUUGau -5'
30755 3' -58.1 NC_006552.1 + 28580 0.68 0.428432
Target:  5'- cGCGCCGuUGUAGaCGGCaUGCCAAUUc -3'
miRNA:   3'- -CGCGGUcACGUC-GUCGgACGGUUGAu -5'
30755 3' -58.1 NC_006552.1 + 30579 0.69 0.364118
Target:  5'- aGCGCCGGgauugGUAGCAGCgucgcacuaucauCgguacucgGCCAGCUAg -3'
miRNA:   3'- -CGCGGUCa----CGUCGUCG-------------Ga-------CGGUUGAU- -5'
30755 3' -58.1 NC_006552.1 + 44365 0.69 0.356456
Target:  5'- uCGUCAGUGcCAGCAGCCgGUCGGa-- -3'
miRNA:   3'- cGCGGUCAC-GUCGUCGGaCGGUUgau -5'
30755 3' -58.1 NC_006552.1 + 49172 0.69 0.348077
Target:  5'- gGCuGCCcGcacUGCGGCGGCCUGguCCGGCUGg -3'
miRNA:   3'- -CG-CGGuC---ACGUCGUCGGAC--GGUUGAU- -5'
30755 3' -58.1 NC_006552.1 + 8430 0.7 0.33984
Target:  5'- cGCGCCAGgcgcGCAGCAGUCccucgggaaucuUGCCcuGCUu -3'
miRNA:   3'- -CGCGGUCa---CGUCGUCGG------------ACGGu-UGAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.