miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30757 5' -57.5 NC_006552.1 + 16191 0.66 0.666386
Target:  5'- aGCGGAguucuGGUCGacCGUgGUccggaCCugGCCGu -3'
miRNA:   3'- -CGCCUau---CCAGC--GCAgCA-----GGugCGGC- -5'
30757 5' -57.5 NC_006552.1 + 11360 0.66 0.655877
Target:  5'- gGCGGccgAGGUUGgGaagaaGUCCAgGCCGu -3'
miRNA:   3'- -CGCCua-UCCAGCgCag---CAGGUgCGGC- -5'
30757 5' -57.5 NC_006552.1 + 22272 0.66 0.655877
Target:  5'- cGCGGAgccGGUCGC-UCG-CCGCaucGCUGa -3'
miRNA:   3'- -CGCCUau-CCAGCGcAGCaGGUG---CGGC- -5'
30757 5' -57.5 NC_006552.1 + 33178 0.68 0.582245
Target:  5'- cGgGGGUGGuGUCuGgGUUGUCCagguggaguugcACGCCGg -3'
miRNA:   3'- -CgCCUAUC-CAG-CgCAGCAGG------------UGCGGC- -5'
30757 5' -57.5 NC_006552.1 + 45194 0.68 0.582245
Target:  5'- cGCGGccaccuuuGG-CGCGUCGgCCugGCCc -3'
miRNA:   3'- -CGCCuau-----CCaGCGCAGCaGGugCGGc -5'
30757 5' -57.5 NC_006552.1 + 58603 0.68 0.561431
Target:  5'- cGuuGAUGGuGg-GCGUCGguggCCGCGCCGg -3'
miRNA:   3'- -CgcCUAUC-CagCGCAGCa---GGUGCGGC- -5'
30757 5' -57.5 NC_006552.1 + 61684 0.68 0.551098
Target:  5'- aCGGAccuGGcCGC-UCGaCCACGCCGg -3'
miRNA:   3'- cGCCUau-CCaGCGcAGCaGGUGCGGC- -5'
30757 5' -57.5 NC_006552.1 + 11262 0.69 0.520479
Target:  5'- cGCGGA----UCGCGUCGgccaauauggcCCAUGCCGg -3'
miRNA:   3'- -CGCCUauccAGCGCAGCa----------GGUGCGGC- -5'
30757 5' -57.5 NC_006552.1 + 21025 0.7 0.424108
Target:  5'- uCGGGUAGGUCGUccauGUCGcccacaUCCAgGUCGg -3'
miRNA:   3'- cGCCUAUCCAGCG----CAGC------AGGUgCGGC- -5'
30757 5' -57.5 NC_006552.1 + 32451 0.74 0.273951
Target:  5'- gGCGGAUcAGGUCggccaGCGUCauaCCGCGCCa -3'
miRNA:   3'- -CGCCUA-UCCAG-----CGCAGca-GGUGCGGc -5'
30757 5' -57.5 NC_006552.1 + 33595 1.1 0.000849
Target:  5'- uGCGGAUAGGUCGCGUCGUCCACGCCGu -3'
miRNA:   3'- -CGCCUAUCCAGCGCAGCAGGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.