miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30758 3' -54.5 NC_006552.1 + 32797 1.12 0.00082
Target:  5'- uGGGUGAACAUCAGCCCGGAGCCAUACa -3'
miRNA:   3'- -CCCACUUGUAGUCGGGCCUCGGUAUG- -5'
30758 3' -54.5 NC_006552.1 + 31269 0.72 0.422972
Target:  5'- gGGGUGAuCggCAGgCCGGuAGCCGUGu -3'
miRNA:   3'- -CCCACUuGuaGUCgGGCC-UCGGUAUg -5'
30758 3' -54.5 NC_006552.1 + 31839 0.71 0.492193
Target:  5'- cGGGUGAugcGCcgCAGgUCGGAGUCGggGCg -3'
miRNA:   3'- -CCCACU---UGuaGUCgGGCCUCGGUa-UG- -5'
30758 3' -54.5 NC_006552.1 + 17908 0.68 0.642717
Target:  5'- uGGcGAACGcuaUCGGCCCGaGAGCUAUc- -3'
miRNA:   3'- cCCaCUUGU---AGUCGGGC-CUCGGUAug -5'
30758 3' -54.5 NC_006552.1 + 1998 0.68 0.697268
Target:  5'- uGGGcu-GCAUCAGCCUGGAuCCGc-- -3'
miRNA:   3'- -CCCacuUGUAGUCGGGCCUcGGUaug -5'
30758 3' -54.5 NC_006552.1 + 59328 0.67 0.722978
Target:  5'- aGGUGcauaugugcgguaacAGCGUCAGCCCGccGCCGaugGCa -3'
miRNA:   3'- cCCAC---------------UUGUAGUCGGGCcuCGGUa--UG- -5'
30758 3' -54.5 NC_006552.1 + 57769 0.66 0.760522
Target:  5'- uGGGU---CAUCAGCCUGGAGaaCGUGa -3'
miRNA:   3'- -CCCAcuuGUAGUCGGGCCUCg-GUAUg -5'
30758 3' -54.5 NC_006552.1 + 11566 0.66 0.769664
Target:  5'- cGGUGAucuugcugccacuGCGcCGGCCCaGGGCC-UGCa -3'
miRNA:   3'- cCCACU-------------UGUaGUCGGGcCUCGGuAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.