Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30759 | 3' | -55.5 | NC_006552.1 | + | 62450 | 0.66 | 0.782479 |
Target: 5'- cGGCGUUccggcgccGCUGCGCCucACCGAG-UGGa -3' miRNA: 3'- -UCGCAGua------UGGCGCGG--UGGCUUgACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 1021 | 0.66 | 0.782479 |
Target: 5'- cGCGccUCGUcACgGCGCUGCCGGGCa-- -3' miRNA: 3'- uCGC--AGUA-UGgCGCGGUGGCUUGacc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 26549 | 0.66 | 0.772675 |
Target: 5'- cAGCGUCAggcgcucgGCCugcGCGCCAUCGuAGgUGa -3' miRNA: 3'- -UCGCAGUa-------UGG---CGCGGUGGC-UUgACc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 34432 | 0.66 | 0.752659 |
Target: 5'- aAGCuGUUGUACUGgGCCGgCGAGCa-- -3' miRNA: 3'- -UCG-CAGUAUGGCgCGGUgGCUUGacc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 59408 | 0.66 | 0.742469 |
Target: 5'- cAGCGUCAggcggugGCgGCGUgaaCGCgGAACUGu -3' miRNA: 3'- -UCGCAGUa------UGgCGCG---GUGgCUUGACc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 62558 | 0.67 | 0.732172 |
Target: 5'- cGGCGUCAg--CGCGa---CGAACUGGa -3' miRNA: 3'- -UCGCAGUaugGCGCggugGCUUGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 26340 | 0.67 | 0.732172 |
Target: 5'- cGCGUCAgguagagGCGCgCGCCGGucacACUGGc -3' miRNA: 3'- uCGCAGUaugg---CGCG-GUGGCU----UGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 40229 | 0.67 | 0.721779 |
Target: 5'- cAGCGUCAUGCggcagaaagUGCGUU-CCGAACaGGu -3' miRNA: 3'- -UCGCAGUAUG---------GCGCGGuGGCUUGaCC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 35916 | 0.67 | 0.721779 |
Target: 5'- aGGCGUUGUagcuuGCCuGCGCgGCCuGGGCUuGGg -3' miRNA: 3'- -UCGCAGUA-----UGG-CGCGgUGG-CUUGA-CC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 7234 | 0.67 | 0.700746 |
Target: 5'- cGCGg---GCCuGCGCCAUC-AACUGGu -3' miRNA: 3'- uCGCaguaUGG-CGCGGUGGcUUGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 2180 | 0.68 | 0.657995 |
Target: 5'- cGCGauagccCAUACCGCGCCGCUucGCUu- -3' miRNA: 3'- uCGCa-----GUAUGGCGCGGUGGcuUGAcc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 15256 | 0.69 | 0.61487 |
Target: 5'- aGGCGUCGUcuGCCGU-CCGCU--GCUGGu -3' miRNA: 3'- -UCGCAGUA--UGGCGcGGUGGcuUGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 38676 | 0.69 | 0.613792 |
Target: 5'- gGGCGUCAgucauggcUACCGCGCCcuugguacgcucgACgCGAGCg-- -3' miRNA: 3'- -UCGCAGU--------AUGGCGCGG-------------UG-GCUUGacc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 15556 | 0.69 | 0.593357 |
Target: 5'- uGGCGUCGgggcuugcUGCUGCGCCGCC----UGGu -3' miRNA: 3'- -UCGCAGU--------AUGGCGCGGUGGcuugACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 35286 | 0.69 | 0.571971 |
Target: 5'- gGGC-UCAUGCCGCGCagggcguCCGAcaUGGa -3' miRNA: 3'- -UCGcAGUAUGGCGCGgu-----GGCUugACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 4774 | 0.69 | 0.571971 |
Target: 5'- uGCGUCAccUGCgGCGCCACC--ACUa- -3' miRNA: 3'- uCGCAGU--AUGgCGCGGUGGcuUGAcc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 21641 | 0.69 | 0.561344 |
Target: 5'- cGCGaUUcUGCCG-GCCACCG-GCUGGc -3' miRNA: 3'- uCGC-AGuAUGGCgCGGUGGCuUGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 51115 | 0.7 | 0.540263 |
Target: 5'- cGCGaUC--GCCGCGgCACCGAACUc- -3' miRNA: 3'- uCGC-AGuaUGGCGCgGUGGCUUGAcc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 64753 | 0.7 | 0.518422 |
Target: 5'- uGGCGcucaacaUCGUccaaCGCGCCACCGAcgccCUGGg -3' miRNA: 3'- -UCGC-------AGUAug--GCGCGGUGGCUu---GACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 55177 | 0.7 | 0.509169 |
Target: 5'- cGUGcucCAUGCgCGCGaCGCUGAGCUGGg -3' miRNA: 3'- uCGCa--GUAUG-GCGCgGUGGCUUGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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