miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30759 3' -55.5 NC_006552.1 + 15256 0.69 0.61487
Target:  5'- aGGCGUCGUcuGCCGU-CCGCU--GCUGGu -3'
miRNA:   3'- -UCGCAGUA--UGGCGcGGUGGcuUGACC- -5'
30759 3' -55.5 NC_006552.1 + 2180 0.68 0.657995
Target:  5'- cGCGauagccCAUACCGCGCCGCUucGCUu- -3'
miRNA:   3'- uCGCa-----GUAUGGCGCGGUGGcuUGAcc -5'
30759 3' -55.5 NC_006552.1 + 7234 0.67 0.700746
Target:  5'- cGCGg---GCCuGCGCCAUC-AACUGGu -3'
miRNA:   3'- uCGCaguaUGG-CGCGGUGGcUUGACC- -5'
30759 3' -55.5 NC_006552.1 + 40229 0.67 0.721779
Target:  5'- cAGCGUCAUGCggcagaaagUGCGUU-CCGAACaGGu -3'
miRNA:   3'- -UCGCAGUAUG---------GCGCGGuGGCUUGaCC- -5'
30759 3' -55.5 NC_006552.1 + 35916 0.67 0.721779
Target:  5'- aGGCGUUGUagcuuGCCuGCGCgGCCuGGGCUuGGg -3'
miRNA:   3'- -UCGCAGUA-----UGG-CGCGgUGG-CUUGA-CC- -5'
30759 3' -55.5 NC_006552.1 + 26340 0.67 0.732172
Target:  5'- cGCGUCAgguagagGCGCgCGCCGGucacACUGGc -3'
miRNA:   3'- uCGCAGUaugg---CGCG-GUGGCU----UGACC- -5'
30759 3' -55.5 NC_006552.1 + 62558 0.67 0.732172
Target:  5'- cGGCGUCAg--CGCGa---CGAACUGGa -3'
miRNA:   3'- -UCGCAGUaugGCGCggugGCUUGACC- -5'
30759 3' -55.5 NC_006552.1 + 59408 0.66 0.742469
Target:  5'- cAGCGUCAggcggugGCgGCGUgaaCGCgGAACUGu -3'
miRNA:   3'- -UCGCAGUa------UGgCGCG---GUGgCUUGACc -5'
30759 3' -55.5 NC_006552.1 + 34432 0.66 0.752659
Target:  5'- aAGCuGUUGUACUGgGCCGgCGAGCa-- -3'
miRNA:   3'- -UCG-CAGUAUGGCgCGGUgGCUUGacc -5'
30759 3' -55.5 NC_006552.1 + 26549 0.66 0.772675
Target:  5'- cAGCGUCAggcgcucgGCCugcGCGCCAUCGuAGgUGa -3'
miRNA:   3'- -UCGCAGUa-------UGG---CGCGGUGGC-UUgACc -5'
30759 3' -55.5 NC_006552.1 + 1021 0.66 0.782479
Target:  5'- cGCGccUCGUcACgGCGCUGCCGGGCa-- -3'
miRNA:   3'- uCGC--AGUA-UGgCGCGGUGGCUUGacc -5'
30759 3' -55.5 NC_006552.1 + 62450 0.66 0.782479
Target:  5'- cGGCGUUccggcgccGCUGCGCCucACCGAG-UGGa -3'
miRNA:   3'- -UCGCAGua------UGGCGCGG--UGGCUUgACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.