miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3076 3' -59.4 NC_001493.1 + 83747 0.66 0.731776
Target:  5'- -gGAAauuuUCGGGacucuugGAUCCCauGGGGGCCAUa -3'
miRNA:   3'- gaCUU----GGCCCa------CUAGGG--CUCCCGGUA- -5'
3076 3' -59.4 NC_001493.1 + 105871 0.66 0.702241
Target:  5'- --cGACCGGGUacacggagacgaGGUCCCGGGGGgUg- -3'
miRNA:   3'- gacUUGGCCCA------------CUAGGGCUCCCgGua -5'
3076 3' -59.4 NC_001493.1 + 58827 0.67 0.641839
Target:  5'- -gGAACCccuucGGUGucGUCCCGcGGGCCGa -3'
miRNA:   3'- gaCUUGGc----CCAC--UAGGGCuCCCGGUa -5'
3076 3' -59.4 NC_001493.1 + 112699 0.68 0.631698
Target:  5'- cCUGGAggaaCGGGcGAUCCCG-GGGCUu- -3'
miRNA:   3'- -GACUUg---GCCCaCUAGGGCuCCCGGua -5'
3076 3' -59.4 NC_001493.1 + 132311 0.68 0.591212
Target:  5'- uUGAACCGcGUGucucucCCCGGuGGGCCAUc -3'
miRNA:   3'- gACUUGGCcCACua----GGGCU-CCCGGUA- -5'
3076 3' -59.4 NC_001493.1 + 130473 0.68 0.591212
Target:  5'- -cGGugCGGGUGcgggCCCGAGGGaaAUg -3'
miRNA:   3'- gaCUugGCCCACua--GGGCUCCCggUA- -5'
3076 3' -59.4 NC_001493.1 + 16757 0.68 0.591212
Target:  5'- uUGAACCGcGUGucucucCCCGGuGGGCCAUc -3'
miRNA:   3'- gACUUGGCcCACua----GGGCU-CCCGGUA- -5'
3076 3' -59.4 NC_001493.1 + 14919 0.68 0.591212
Target:  5'- -cGGugCGGGUGcgggCCCGAGGGaaAUg -3'
miRNA:   3'- gaCUugGCCCACua--GGGCUCCCggUA- -5'
3076 3' -59.4 NC_001493.1 + 80301 0.69 0.561128
Target:  5'- -cGAGCgGGGgGAUCCCGuccauGGCCAg -3'
miRNA:   3'- gaCUUGgCCCaCUAGGGCuc---CCGGUa -5'
3076 3' -59.4 NC_001493.1 + 113699 0.69 0.561128
Target:  5'- cCUGAAacaCGGGUGGUCCCucacugcgcGGGGCUu- -3'
miRNA:   3'- -GACUUg--GCCCACUAGGGc--------UCCCGGua -5'
3076 3' -59.4 NC_001493.1 + 29746 0.71 0.446546
Target:  5'- -aGGuCCaucacGGUGGUCCCGAGGGUCGUc -3'
miRNA:   3'- gaCUuGGc----CCACUAGGGCUCCCGGUA- -5'
3076 3' -59.4 NC_001493.1 + 62307 0.76 0.206815
Target:  5'- gUGAuugACCGGGUcGGUCCaCGGGGGCUAUc -3'
miRNA:   3'- gACU---UGGCCCA-CUAGG-GCUCCCGGUA- -5'
3076 3' -59.4 NC_001493.1 + 57641 1.06 0.001759
Target:  5'- aCUGAACCGGGUGAUCCCGAGGGCCAUa -3'
miRNA:   3'- -GACUUGGCCCACUAGGGCUCCCGGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.