miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3076 5' -57.5 NC_001493.1 + 22010 0.66 0.859575
Target:  5'- gGAUGGgGUUCUUgAGGUCGgUGGagGCg -3'
miRNA:   3'- gCUGCCgCAGGAGgUCUAGUgACC--CG- -5'
3076 5' -57.5 NC_001493.1 + 44107 0.66 0.844013
Target:  5'- uGACGGUcUCCgUCAGAUCAaccaaGGGUg -3'
miRNA:   3'- gCUGCCGcAGGaGGUCUAGUga---CCCG- -5'
3076 5' -57.5 NC_001493.1 + 24012 0.66 0.839196
Target:  5'- aGAUGGUucgagccauagagccGccuucucggCCUCUAGAUCACggGGGCg -3'
miRNA:   3'- gCUGCCG---------------Ca--------GGAGGUCUAGUGa-CCCG- -5'
3076 5' -57.5 NC_001493.1 + 89645 0.66 0.835947
Target:  5'- aCGGCGGCGUUCUCUAGggCucccCUGa-- -3'
miRNA:   3'- -GCUGCCGCAGGAGGUCuaGu---GACccg -5'
3076 5' -57.5 NC_001493.1 + 81637 0.67 0.81069
Target:  5'- uGGCgGGCGaUCaaCCGGGUgCAcCUGGGCg -3'
miRNA:   3'- gCUG-CCGC-AGgaGGUCUA-GU-GACCCG- -5'
3076 5' -57.5 NC_001493.1 + 32832 0.67 0.793047
Target:  5'- uCGAuCGGCaGUUCUCCGucagCACcGGGCa -3'
miRNA:   3'- -GCU-GCCG-CAGGAGGUcua-GUGaCCCG- -5'
3076 5' -57.5 NC_001493.1 + 91511 0.67 0.774836
Target:  5'- aCGGgGGCGUCCggUCCGuGA-CAUgGGGCc -3'
miRNA:   3'- -GCUgCCGCAGG--AGGU-CUaGUGaCCCG- -5'
3076 5' -57.5 NC_001493.1 + 84243 0.68 0.76554
Target:  5'- cCGGUGGCGUUCgaucgUCCA--UCGCUGGGUc -3'
miRNA:   3'- -GCUGCCGCAGG-----AGGUcuAGUGACCCG- -5'
3076 5' -57.5 NC_001493.1 + 48051 0.68 0.756127
Target:  5'- cCGACcGCGagCUCCAug-CACUGGGUc -3'
miRNA:   3'- -GCUGcCGCagGAGGUcuaGUGACCCG- -5'
3076 5' -57.5 NC_001493.1 + 45461 0.68 0.756127
Target:  5'- uCGAagGGUGUcCCUCCGGAUCcgauCUuGGCg -3'
miRNA:   3'- -GCUg-CCGCA-GGAGGUCUAGu---GAcCCG- -5'
3076 5' -57.5 NC_001493.1 + 21758 0.68 0.746608
Target:  5'- -uGCGGCG-CCUUCGauGAUCACUGGu- -3'
miRNA:   3'- gcUGCCGCaGGAGGU--CUAGUGACCcg -5'
3076 5' -57.5 NC_001493.1 + 101662 0.68 0.746608
Target:  5'- aCGAUGGCcaUCUUCCAGGUgccCGCUGGa- -3'
miRNA:   3'- -GCUGCCGc-AGGAGGUCUA---GUGACCcg -5'
3076 5' -57.5 NC_001493.1 + 113437 0.68 0.746608
Target:  5'- gGAgGGgGUUg-CCGGGUCcgugGCUGGGCg -3'
miRNA:   3'- gCUgCCgCAGgaGGUCUAG----UGACCCG- -5'
3076 5' -57.5 NC_001493.1 + 15003 0.69 0.707636
Target:  5'- uGACGGCcgugagcagGUCUUCCAGcacgacCACgcgGGGCu -3'
miRNA:   3'- gCUGCCG---------CAGGAGGUCua----GUGa--CCCG- -5'
3076 5' -57.5 NC_001493.1 + 130557 0.69 0.707636
Target:  5'- uGACGGCcgugagcagGUCUUCCAGcacgacCACgcgGGGCu -3'
miRNA:   3'- gCUGCCG---------CAGGAGGUCua----GUGa--CCCG- -5'
3076 5' -57.5 NC_001493.1 + 41687 0.69 0.697715
Target:  5'- gGACGGCuUCCUCCAGGgccgcCGCUacaaagaacGGcGCg -3'
miRNA:   3'- gCUGCCGcAGGAGGUCUa----GUGA---------CC-CG- -5'
3076 5' -57.5 NC_001493.1 + 11168 0.69 0.68774
Target:  5'- aGGCGGaCGaUCUgaCCAGAccacCACUGGGCc -3'
miRNA:   3'- gCUGCC-GC-AGGa-GGUCUa---GUGACCCG- -5'
3076 5' -57.5 NC_001493.1 + 126723 0.7 0.647474
Target:  5'- aGGCGGaCGaUCUgaCCAGAccaCACUGGGCc -3'
miRNA:   3'- gCUGCC-GC-AGGa-GGUCUa--GUGACCCG- -5'
3076 5' -57.5 NC_001493.1 + 111135 0.7 0.627236
Target:  5'- uGACGGCGUCgUgCA--UCACcaUGGGCc -3'
miRNA:   3'- gCUGCCGCAGgAgGUcuAGUG--ACCCG- -5'
3076 5' -57.5 NC_001493.1 + 7910 0.71 0.560868
Target:  5'- uGGCGG-GUCCcgaguuucuccaauuUUCGGGUCACgGGGCg -3'
miRNA:   3'- gCUGCCgCAGG---------------AGGUCUAGUGaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.