miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30760 5' -59.2 NC_006552.1 + 22011 0.66 0.542361
Target:  5'- gAUCGCugacgguGGcGGCGUccUCGaccaggacacuGGCGGCCuGGCc -3'
miRNA:   3'- -UAGUGu------CC-CCGCA--AGU-----------UCGCCGG-CCG- -5'
30760 5' -59.2 NC_006552.1 + 26536 0.66 0.501345
Target:  5'- -gCGCcGGGGUGUccagcgUCAGGCGcUCGGCc -3'
miRNA:   3'- uaGUGuCCCCGCA------AGUUCGCcGGCCG- -5'
30760 5' -59.2 NC_006552.1 + 2041 0.67 0.48135
Target:  5'- -gCGCcuGGGacaGGCGcUUGAGCGcGCCGGCg -3'
miRNA:   3'- uaGUG--UCC---CCGCaAGUUCGC-CGGCCG- -5'
30760 5' -59.2 NC_006552.1 + 40754 0.67 0.45211
Target:  5'- aGUCAC-GcGGCGUcagcuUCuuGCGGCUGGCg -3'
miRNA:   3'- -UAGUGuCcCCGCA-----AGuuCGCCGGCCG- -5'
30760 5' -59.2 NC_006552.1 + 4813 0.68 0.423866
Target:  5'- --gGCGGGGGCGaugCGcacgcgcacagGGCGGUCGcGCa -3'
miRNA:   3'- uagUGUCCCCGCaa-GU-----------UCGCCGGC-CG- -5'
30760 5' -59.2 NC_006552.1 + 16308 0.68 0.387905
Target:  5'- cUCGaAGGuGGCGUccgcauccgUCAAgccacgggauGCGGCCGGCu -3'
miRNA:   3'- uAGUgUCC-CCGCA---------AGUU----------CGCCGGCCG- -5'
30760 5' -59.2 NC_006552.1 + 31255 0.69 0.361449
Target:  5'- uGUCGCcgccguuGGGGGUGaUC-GGCaGGCCGGUa -3'
miRNA:   3'- -UAGUG-------UCCCCGCaAGuUCG-CCGGCCG- -5'
30760 5' -59.2 NC_006552.1 + 59393 0.69 0.345866
Target:  5'- -cCAUGGaGGGCGcggcagcgUCAGGCGGUggCGGCg -3'
miRNA:   3'- uaGUGUC-CCCGCa-------AGUUCGCCG--GCCG- -5'
30760 5' -59.2 NC_006552.1 + 3746 0.7 0.32999
Target:  5'- uUCGCGGGGGCGacaUCAA-UGGCCGa- -3'
miRNA:   3'- uAGUGUCCCCGCa--AGUUcGCCGGCcg -5'
30760 5' -59.2 NC_006552.1 + 58348 0.7 0.29268
Target:  5'- cUCGCGGGGGCaGUUUcgccGUGGCCaGCc -3'
miRNA:   3'- uAGUGUCCCCG-CAAGuu--CGCCGGcCG- -5'
30760 5' -59.2 NC_006552.1 + 55293 0.71 0.278706
Target:  5'- aGUC-CGGGGccuaccCGUUC-AGCGGCUGGCu -3'
miRNA:   3'- -UAGuGUCCCc-----GCAAGuUCGCCGGCCG- -5'
30760 5' -59.2 NC_006552.1 + 58460 0.71 0.258104
Target:  5'- cGUCGCAGGcGGCGUgaagcacgcacugUCGAGCGcugugcuucucCCGGCa -3'
miRNA:   3'- -UAGUGUCC-CCGCA-------------AGUUCGCc----------GGCCG- -5'
30760 5' -59.2 NC_006552.1 + 31103 1.1 0.000407
Target:  5'- aAUCACAGGGGCGUUCAAGCGGCCGGCa -3'
miRNA:   3'- -UAGUGUCCCCGCAAGUUCGCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.