miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30761 3' -57.9 NC_006552.1 + 3022 0.66 0.618299
Target:  5'- aGCAG-AUCGUG-CUCC-ACCaGGGCGa -3'
miRNA:   3'- -CGUCgUGGUACaGAGGcUGGaCCCGC- -5'
30761 3' -57.9 NC_006552.1 + 24907 0.66 0.598033
Target:  5'- --cGC-CCAUGUCgauggccaccgccugCCGACCgcUGGGCa -3'
miRNA:   3'- cguCGuGGUACAGa--------------GGCUGG--ACCCGc -5'
30761 3' -57.9 NC_006552.1 + 43003 0.67 0.586341
Target:  5'- gGCGGCgACCuugGUCUUC-ACCcGGGCa -3'
miRNA:   3'- -CGUCG-UGGua-CAGAGGcUGGaCCCGc -5'
30761 3' -57.9 NC_006552.1 + 19750 0.67 0.586341
Target:  5'- cGCugcGCGCCAgg-CUUCuACCUGGGCc -3'
miRNA:   3'- -CGu--CGUGGUacaGAGGcUGGACCCGc -5'
30761 3' -57.9 NC_006552.1 + 13618 0.67 0.565202
Target:  5'- cGCuGCGCCuUGUCggcaCgGGCCUGcucGGCGg -3'
miRNA:   3'- -CGuCGUGGuACAGa---GgCUGGAC---CCGC- -5'
30761 3' -57.9 NC_006552.1 + 25223 0.68 0.523592
Target:  5'- cGCGGCGCCGUugacguugagCUgCGACgCUGuGGCGa -3'
miRNA:   3'- -CGUCGUGGUAca--------GAgGCUG-GAC-CCGC- -5'
30761 3' -57.9 NC_006552.1 + 31756 0.68 0.523592
Target:  5'- aGCAGUACC---UCUCCGACCUucaGGUc -3'
miRNA:   3'- -CGUCGUGGuacAGAGGCUGGAc--CCGc -5'
30761 3' -57.9 NC_006552.1 + 10624 0.68 0.483208
Target:  5'- -uGGCGCCAgcaGUCUcaCCGGCCacGGCGa -3'
miRNA:   3'- cgUCGUGGUa--CAGA--GGCUGGacCCGC- -5'
30761 3' -57.9 NC_006552.1 + 32028 0.69 0.463583
Target:  5'- cCAGCGCCAUGUCa---GCCagGGGCGu -3'
miRNA:   3'- cGUCGUGGUACAGaggcUGGa-CCCGC- -5'
30761 3' -57.9 NC_006552.1 + 37943 0.71 0.347467
Target:  5'- cGCAGCuUgAUGUCguuUCCGGCCUuggccaGGGCGu -3'
miRNA:   3'- -CGUCGuGgUACAG---AGGCUGGA------CCCGC- -5'
30761 3' -57.9 NC_006552.1 + 30845 1.1 0.000618
Target:  5'- aGCAGCACCAUGUCUCCGACCUGGGCGc -3'
miRNA:   3'- -CGUCGUGGUACAGAGGCUGGACCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.