miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30761 5' -54.1 NC_006552.1 + 36097 0.66 0.817663
Target:  5'- aGCGCCGgcGUCacccgcGCCCuGCUGCg -3'
miRNA:   3'- gUGUGGCauCAGcuau--CGGG-UGACGa -5'
30761 5' -54.1 NC_006552.1 + 1684 0.66 0.817663
Target:  5'- aGCACgagCGUGucacaCGAUGGCUCGCUGCg -3'
miRNA:   3'- gUGUG---GCAUca---GCUAUCGGGUGACGa -5'
30761 5' -54.1 NC_006552.1 + 53798 0.66 0.798664
Target:  5'- gGCACCG-GGUCGugcucuuUGGCCgGCUGg- -3'
miRNA:   3'- gUGUGGCaUCAGCu------AUCGGgUGACga -5'
30761 5' -54.1 NC_006552.1 + 15546 0.67 0.748297
Target:  5'- gCACGCCGauuggcGUCGG-GGCUUGCUGCUg -3'
miRNA:   3'- -GUGUGGCau----CAGCUaUCGGGUGACGA- -5'
30761 5' -54.1 NC_006552.1 + 49865 0.68 0.716562
Target:  5'- gACGCCGc-GUCGGacGCCCGCUGg- -3'
miRNA:   3'- gUGUGGCauCAGCUauCGGGUGACga -5'
30761 5' -54.1 NC_006552.1 + 25823 0.68 0.715489
Target:  5'- gCACGCCcgcaugaaccucggCGAUGGCgCCACUGCUg -3'
miRNA:   3'- -GUGUGGcauca---------GCUAUCG-GGUGACGA- -5'
30761 5' -54.1 NC_006552.1 + 33989 0.68 0.673127
Target:  5'- uCACGCCGUGGUCGGUguacuccaAG-CCAUUGg- -3'
miRNA:   3'- -GUGUGGCAUCAGCUA--------UCgGGUGACga -5'
30761 5' -54.1 NC_006552.1 + 22325 0.69 0.640102
Target:  5'- uGCGCCGgucGGUCGAUAGCCUcauccgacACcGCc -3'
miRNA:   3'- gUGUGGCa--UCAGCUAUCGGG--------UGaCGa -5'
30761 5' -54.1 NC_006552.1 + 27867 0.69 0.629065
Target:  5'- gAUGCCGgcGUCGAUGuucacGCCCAUgaUGCg -3'
miRNA:   3'- gUGUGGCauCAGCUAU-----CGGGUG--ACGa -5'
30761 5' -54.1 NC_006552.1 + 2062 0.69 0.607009
Target:  5'- gCGCGCCGgcGUCGugcgcGGCCUGCUGa- -3'
miRNA:   3'- -GUGUGGCauCAGCua---UCGGGUGACga -5'
30761 5' -54.1 NC_006552.1 + 14417 0.71 0.509806
Target:  5'- --aACCGUGG-CGcccuGCCCGCUGCUg -3'
miRNA:   3'- gugUGGCAUCaGCuau-CGGGUGACGA- -5'
30761 5' -54.1 NC_006552.1 + 30879 1.08 0.001765
Target:  5'- gCACACCGUAGUCGAUAGCCCACUGCUg -3'
miRNA:   3'- -GUGUGGCAUCAGCUAUCGGGUGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.