Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30763 | 5' | -59.1 | NC_006552.1 | + | 11320 | 0.66 | 0.596484 |
Target: 5'- cUCCCugGauguCGGCGGCGuCGAUGgcuuCCu -3' miRNA: 3'- -GGGGugCc---GCCGCCGC-GUUACaac-GG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 4802 | 0.69 | 0.391998 |
Target: 5'- cCCCCACcuGCGGCgGGgGCGAUGc-GCa -3' miRNA: 3'- -GGGGUGc-CGCCG-CCgCGUUACaaCGg -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 21138 | 0.68 | 0.45553 |
Target: 5'- gCCCagguugacggGCGGCGGCgacgcgauaGGCGCAuccg-GCCg -3' miRNA: 3'- gGGG----------UGCCGCCG---------CCGCGUuacaaCGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 60136 | 0.68 | 0.45553 |
Target: 5'- aCCCAUGGUGGCGG-GagaaAGUGcgGCa -3' miRNA: 3'- gGGGUGCCGCCGCCgCg---UUACaaCGg -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 33748 | 0.68 | 0.474683 |
Target: 5'- gCCagCGCGGCGGCGGCauugcuguugaGCAGaacgccgGCCg -3' miRNA: 3'- -GGg-GUGCCGCCGCCG-----------CGUUacaa---CGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 5015 | 0.68 | 0.474683 |
Target: 5'- aCUUCAgguUGGCGGUGGCGUccUGguacaggUGCCg -3' miRNA: 3'- -GGGGU---GCCGCCGCCGCGuuACa------ACGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 19435 | 0.68 | 0.474683 |
Target: 5'- aCCCUACGG-GG-GGCGuCAGUaGUUGUa -3' miRNA: 3'- -GGGGUGCCgCCgCCGC-GUUA-CAACGg -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 56863 | 0.68 | 0.474683 |
Target: 5'- gCgCCGCGGCGaGCGGCgaacGCAGggGUU-CCg -3' miRNA: 3'- -GgGGUGCCGC-CGCCG----CGUUa-CAAcGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 26711 | 0.67 | 0.514138 |
Target: 5'- gCCCAgGGCgccgaaGGCGucgccGUGCAGUGggcuUUGCCa -3' miRNA: 3'- gGGGUgCCG------CCGC-----CGCGUUAC----AACGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 41124 | 0.7 | 0.374933 |
Target: 5'- -gCCGCGucGCGGUccuGCGCGAUGaUGCCg -3' miRNA: 3'- ggGGUGC--CGCCGc--CGCGUUACaACGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 60828 | 0.7 | 0.358379 |
Target: 5'- cCCCUACGGCGaGCccGGCGaucgGUUGUg -3' miRNA: 3'- -GGGGUGCCGC-CG--CCGCguuaCAACGg -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 15748 | 0.71 | 0.326831 |
Target: 5'- gCCgGCauccGGCGGUGGCGCGAgcUUGUCc -3' miRNA: 3'- gGGgUG----CCGCCGCCGCGUUacAACGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 22554 | 0.76 | 0.142655 |
Target: 5'- gCCCC-CaGCGGCGGCGCAGUccauccugGCCc -3' miRNA: 3'- -GGGGuGcCGCCGCCGCGUUAcaa-----CGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 48995 | 0.74 | 0.189625 |
Target: 5'- uCCCCGcCGGgcaagccCGGCGGCGCGAgcGUUcaGCCg -3' miRNA: 3'- -GGGGU-GCC-------GCCGCCGCGUUa-CAA--CGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 14059 | 0.74 | 0.205279 |
Target: 5'- aCUCAuCGGCGGuUGGCGCccccuGUGUUGCg -3' miRNA: 3'- gGGGU-GCCGCC-GCCGCGu----UACAACGg -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 4268 | 0.72 | 0.257152 |
Target: 5'- uUCCCGCuuuGGCGGUGGuUGCGGUagUGCCc -3' miRNA: 3'- -GGGGUG---CCGCCGCC-GCGUUAcaACGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 34816 | 0.72 | 0.283457 |
Target: 5'- gCCUucggACGGCcgaGGCGGCGCAGgucguagggGUUGCg -3' miRNA: 3'- gGGG----UGCCG---CCGCCGCGUUa--------CAACGg -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 12181 | 0.71 | 0.290357 |
Target: 5'- gUUCAUGGUGGCGGC-CAGUGccUUGUCg -3' miRNA: 3'- gGGGUGCCGCCGCCGcGUUAC--AACGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 12890 | 0.71 | 0.304551 |
Target: 5'- aCCU-CGGCGGCGuGCGCcuuGAUGUcGUCg -3' miRNA: 3'- gGGGuGCCGCCGC-CGCG---UUACAaCGG- -5' |
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30763 | 5' | -59.1 | NC_006552.1 | + | 33386 | 0.71 | 0.307453 |
Target: 5'- gCCCUucguAgGGCGGCGGCGCuuagacugcGCCg -3' miRNA: 3'- -GGGG----UgCCGCCGCCGCGuuacaa---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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