Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30767 | 3' | -55.7 | NC_006552.1 | + | 8248 | 0.66 | 0.715057 |
Target: 5'- gCGGGCCAUggUGUCCaggcuACgGUCGGUg- -3' miRNA: 3'- aGUCCGGUAa-GCAGG-----UGgCAGUCGaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 11861 | 0.66 | 0.682657 |
Target: 5'- gUAGGCCucg-GUCaCAUCGUCGGCg- -3' miRNA: 3'- aGUCCGGuaagCAG-GUGGCAGUCGaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 36286 | 0.67 | 0.659701 |
Target: 5'- uUCAGGUguCGgcCGUCCGCCGUCuaucucuuggaaaAGCUc -3' miRNA: 3'- -AGUCCG--GUaaGCAGGUGGCAG-------------UCGAa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 15248 | 0.68 | 0.594903 |
Target: 5'- uUCGGGaaAggcgUCGUCUGCCGUCcGCUg -3' miRNA: 3'- -AGUCCggUa---AGCAGGUGGCAGuCGAa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 27845 | 0.68 | 0.551472 |
Target: 5'- gCAGGCCGUagcCGUCCACCuugauGcCGGCg- -3' miRNA: 3'- aGUCCGGUAa--GCAGGUGG-----CaGUCGaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 19296 | 0.69 | 0.530107 |
Target: 5'- cCGGGCCAgucacgCGcCCACCuUCAGCc- -3' miRNA: 3'- aGUCCGGUaa----GCaGGUGGcAGUCGaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 22128 | 0.69 | 0.509052 |
Target: 5'- --cGGCCAccguggcacCGUCCACCGUCAGg-- -3' miRNA: 3'- aguCCGGUaa-------GCAGGUGGCAGUCgaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 11913 | 0.72 | 0.356578 |
Target: 5'- uUCAGGCCGUccaCGUCCGCCaUCuGGCg- -3' miRNA: 3'- -AGUCCGGUAa--GCAGGUGGcAG-UCGaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 60623 | 0.72 | 0.356578 |
Target: 5'- cCAGGCCA-UCGUCCAUU-UCAGCa- -3' miRNA: 3'- aGUCCGGUaAGCAGGUGGcAGUCGaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 44744 | 0.73 | 0.315955 |
Target: 5'- cCAGGCCucGUUCGgcucgggCCgACCGUCGGCg- -3' miRNA: 3'- aGUCCGG--UAAGCa------GG-UGGCAGUCGaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 39761 | 0.75 | 0.221097 |
Target: 5'- --cGGCgUAUUCGUCCACgGUCAGCg- -3' miRNA: 3'- aguCCG-GUAAGCAGGUGgCAGUCGaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 33600 | 0.75 | 0.221097 |
Target: 5'- aUAGGUCGcgUCGUCCacGCCGUCGGCg- -3' miRNA: 3'- aGUCCGGUa-AGCAGG--UGGCAGUCGaa -5' |
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30767 | 3' | -55.7 | NC_006552.1 | + | 27795 | 1.06 | 0.00146 |
Target: 5'- gUCAGGCCAUUCGUCCACCGUCAGCUUg -3' miRNA: 3'- -AGUCCGGUAAGCAGGUGGCAGUCGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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