miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30767 3' -55.7 NC_006552.1 + 8248 0.66 0.715057
Target:  5'- gCGGGCCAUggUGUCCaggcuACgGUCGGUg- -3'
miRNA:   3'- aGUCCGGUAa-GCAGG-----UGgCAGUCGaa -5'
30767 3' -55.7 NC_006552.1 + 11861 0.66 0.682657
Target:  5'- gUAGGCCucg-GUCaCAUCGUCGGCg- -3'
miRNA:   3'- aGUCCGGuaagCAG-GUGGCAGUCGaa -5'
30767 3' -55.7 NC_006552.1 + 36286 0.67 0.659701
Target:  5'- uUCAGGUguCGgcCGUCCGCCGUCuaucucuuggaaaAGCUc -3'
miRNA:   3'- -AGUCCG--GUaaGCAGGUGGCAG-------------UCGAa -5'
30767 3' -55.7 NC_006552.1 + 15248 0.68 0.594903
Target:  5'- uUCGGGaaAggcgUCGUCUGCCGUCcGCUg -3'
miRNA:   3'- -AGUCCggUa---AGCAGGUGGCAGuCGAa -5'
30767 3' -55.7 NC_006552.1 + 27845 0.68 0.551472
Target:  5'- gCAGGCCGUagcCGUCCACCuugauGcCGGCg- -3'
miRNA:   3'- aGUCCGGUAa--GCAGGUGG-----CaGUCGaa -5'
30767 3' -55.7 NC_006552.1 + 19296 0.69 0.530107
Target:  5'- cCGGGCCAgucacgCGcCCACCuUCAGCc- -3'
miRNA:   3'- aGUCCGGUaa----GCaGGUGGcAGUCGaa -5'
30767 3' -55.7 NC_006552.1 + 22128 0.69 0.509052
Target:  5'- --cGGCCAccguggcacCGUCCACCGUCAGg-- -3'
miRNA:   3'- aguCCGGUaa-------GCAGGUGGCAGUCgaa -5'
30767 3' -55.7 NC_006552.1 + 60623 0.72 0.356578
Target:  5'- cCAGGCCA-UCGUCCAUU-UCAGCa- -3'
miRNA:   3'- aGUCCGGUaAGCAGGUGGcAGUCGaa -5'
30767 3' -55.7 NC_006552.1 + 11913 0.72 0.356578
Target:  5'- uUCAGGCCGUccaCGUCCGCCaUCuGGCg- -3'
miRNA:   3'- -AGUCCGGUAa--GCAGGUGGcAG-UCGaa -5'
30767 3' -55.7 NC_006552.1 + 44744 0.73 0.315955
Target:  5'- cCAGGCCucGUUCGgcucgggCCgACCGUCGGCg- -3'
miRNA:   3'- aGUCCGG--UAAGCa------GG-UGGCAGUCGaa -5'
30767 3' -55.7 NC_006552.1 + 33600 0.75 0.221097
Target:  5'- aUAGGUCGcgUCGUCCacGCCGUCGGCg- -3'
miRNA:   3'- aGUCCGGUa-AGCAGG--UGGCAGUCGaa -5'
30767 3' -55.7 NC_006552.1 + 39761 0.75 0.221097
Target:  5'- --cGGCgUAUUCGUCCACgGUCAGCg- -3'
miRNA:   3'- aguCCG-GUAAGCAGGUGgCAGUCGaa -5'
30767 3' -55.7 NC_006552.1 + 27795 1.06 0.00146
Target:  5'- gUCAGGCCAUUCGUCCACCGUCAGCUUg -3'
miRNA:   3'- -AGUCCGGUAAGCAGGUGGCAGUCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.