miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30767 5' -57.6 NC_006552.1 + 27829 1.08 0.00075
Target:  5'- uUCAAGCUCACGGCUGGCAGGCCGUAGc -3'
miRNA:   3'- -AGUUCGAGUGCCGACCGUCCGGCAUC- -5'
30767 5' -57.6 NC_006552.1 + 64490 0.71 0.319146
Target:  5'- gCAcGCUgGCGGcCUGGCAGGCgGg-- -3'
miRNA:   3'- aGUuCGAgUGCC-GACCGUCCGgCauc -5'
30767 5' -57.6 NC_006552.1 + 11049 0.69 0.430823
Target:  5'- cCAGGCggcCGCcgGGCUucaGCAGGCUGUAGg -3'
miRNA:   3'- aGUUCGa--GUG--CCGAc--CGUCCGGCAUC- -5'
30767 5' -57.6 NC_006552.1 + 2757 0.68 0.469517
Target:  5'- uUCAGGCUgGuucgagugggUGGCcgagGGCGGGCCGcGGa -3'
miRNA:   3'- -AGUUCGAgU----------GCCGa---CCGUCCGGCaUC- -5'
30767 5' -57.6 NC_006552.1 + 12935 0.68 0.479467
Target:  5'- aCAAGCUCggccaGCGcGCUGGCcuuGGCC-UGGc -3'
miRNA:   3'- aGUUCGAG-----UGC-CGACCGu--CCGGcAUC- -5'
30767 5' -57.6 NC_006552.1 + 41020 0.68 0.499668
Target:  5'- aCAgcAGUUCAucCGcGUUGGCugcGGCCGUAGg -3'
miRNA:   3'- aGU--UCGAGU--GC-CGACCGu--CCGGCAUC- -5'
30767 5' -57.6 NC_006552.1 + 41058 0.68 0.499668
Target:  5'- ---cGCUCGCGGauuuccucgGGCAGGUuguCGUAGg -3'
miRNA:   3'- aguuCGAGUGCCga-------CCGUCCG---GCAUC- -5'
30767 5' -57.6 NC_006552.1 + 43169 0.66 0.594437
Target:  5'- gCGAGCUUuCGGUaGGCcaggugcuGGUCGUAGg -3'
miRNA:   3'- aGUUCGAGuGCCGaCCGu-------CCGGCAUC- -5'
30767 5' -57.6 NC_006552.1 + 5427 0.66 0.609544
Target:  5'- aUCAGGCUgCGCGccaguuguucgccgcGCUGGCGGGUgauCGgcGg -3'
miRNA:   3'- -AGUUCGA-GUGC---------------CGACCGUCCG---GCauC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.