miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30768 3' -60.3 NC_006552.1 + 33703 0.66 0.488785
Target:  5'- aAGCCGGCGGGCaa-CGGGaacuCGAACg -3'
miRNA:   3'- cUCGGCCGUCUGgucGUCCg---GCUUGa -5'
30768 3' -60.3 NC_006552.1 + 11054 0.66 0.478887
Target:  5'- cGGCCGcCGGGCuuCAGCAGGCUGuaGGCg -3'
miRNA:   3'- cUCGGCcGUCUG--GUCGUCCGGC--UUGa -5'
30768 3' -60.3 NC_006552.1 + 28110 0.66 0.459393
Target:  5'- cGGUCGGC-GAUCuuuGCcuGGCCGAACa -3'
miRNA:   3'- cUCGGCCGuCUGGu--CGu-CCGGCUUGa -5'
30768 3' -60.3 NC_006552.1 + 15042 0.66 0.459393
Target:  5'- gGGGCUGcGCAG-CaGGCuguuGGCCGAACa -3'
miRNA:   3'- -CUCGGC-CGUCuGgUCGu---CCGGCUUGa -5'
30768 3' -60.3 NC_006552.1 + 11586 0.66 0.459393
Target:  5'- -cGCCGGCccaGGGCCuGCAccaguucgccGCCGAACUc -3'
miRNA:   3'- cuCGGCCG---UCUGGuCGUc---------CGGCUUGA- -5'
30768 3' -60.3 NC_006552.1 + 51869 0.66 0.449805
Target:  5'- gGAGCgccagCGGCAGgaguuggaaGCCAGCAaGCCGAAa- -3'
miRNA:   3'- -CUCG-----GCCGUC---------UGGUCGUcCGGCUUga -5'
30768 3' -60.3 NC_006552.1 + 33554 0.66 0.440329
Target:  5'- cGGCCGacagcaGCAGGCCAGC--GCCGAAa- -3'
miRNA:   3'- cUCGGC------CGUCUGGUCGucCGGCUUga -5'
30768 3' -60.3 NC_006552.1 + 32187 0.67 0.4126
Target:  5'- cGGCCGacuuCAGcACCGGCAuGGUCGGGCg -3'
miRNA:   3'- cUCGGCc---GUC-UGGUCGU-CCGGCUUGa -5'
30768 3' -60.3 NC_006552.1 + 32814 0.67 0.408984
Target:  5'- gGAGCCauacaGGCGGucggugaagcuuuCCcGCGGGCCGAugUa -3'
miRNA:   3'- -CUCGG-----CCGUCu------------GGuCGUCCGGCUugA- -5'
30768 3' -60.3 NC_006552.1 + 13320 0.67 0.394723
Target:  5'- -uGCCGGUucGGACUG--GGGCCGGGCUg -3'
miRNA:   3'- cuCGGCCG--UCUGGUcgUCCGGCUUGA- -5'
30768 3' -60.3 NC_006552.1 + 47642 0.67 0.377356
Target:  5'- aGAGUCGGCAGcaaAGCGuGGCCG-GCUg -3'
miRNA:   3'- -CUCGGCCGUCuggUCGU-CCGGCuUGA- -5'
30768 3' -60.3 NC_006552.1 + 52000 0.68 0.368867
Target:  5'- aGAGCuugccgCGGCGcGCCAGCAacucGCCGAGCa -3'
miRNA:   3'- -CUCG------GCCGUcUGGUCGUc---CGGCUUGa -5'
30768 3' -60.3 NC_006552.1 + 61981 0.68 0.368867
Target:  5'- -cGCC-GCuGugCAGCagcgAGGCCGAACUc -3'
miRNA:   3'- cuCGGcCGuCugGUCG----UCCGGCUUGA- -5'
30768 3' -60.3 NC_006552.1 + 44902 0.68 0.347416
Target:  5'- cGGCCGGCGGaguugcugacccauuGCCucGGCGGuGCCGAAa- -3'
miRNA:   3'- cUCGGCCGUC---------------UGG--UCGUC-CGGCUUga -5'
30768 3' -60.3 NC_006552.1 + 32530 0.69 0.313184
Target:  5'- aAGCCGuGCugcuuGACCAGguuCAGGCCGuAGCg -3'
miRNA:   3'- cUCGGC-CGu----CUGGUC---GUCCGGC-UUGa -5'
30768 3' -60.3 NC_006552.1 + 32705 0.69 0.29849
Target:  5'- cGGCCGGCgcgGGGCCGGUggAGcGCuCGAACa -3'
miRNA:   3'- cUCGGCCG---UCUGGUCG--UC-CG-GCUUGa -5'
30768 3' -60.3 NC_006552.1 + 21433 0.69 0.284336
Target:  5'- -uGCCGcGCAGGCCcc--GGCCGAACUu -3'
miRNA:   3'- cuCGGC-CGUCUGGucguCCGGCUUGA- -5'
30768 3' -60.3 NC_006552.1 + 60356 0.7 0.280194
Target:  5'- uGGCCGGCgaagggccagucgcuAGACCacaAGCGGGCC-AACUc -3'
miRNA:   3'- cUCGGCCG---------------UCUGG---UCGUCCGGcUUGA- -5'
30768 3' -60.3 NC_006552.1 + 34444 0.7 0.27746
Target:  5'- uGGGCCGGCGaGCaCAGCAGGaCgCGGAUc -3'
miRNA:   3'- -CUCGGCCGUcUG-GUCGUCC-G-GCUUGa -5'
30768 3' -60.3 NC_006552.1 + 53803 0.7 0.257629
Target:  5'- cGGGUCGuGCucuuuGGCCGGCuGGCCGAAa- -3'
miRNA:   3'- -CUCGGC-CGu----CUGGUCGuCCGGCUUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.