miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3077 3' -59.5 NC_001493.1 + 9284 0.66 0.790588
Target:  5'- cGGGAgCGCggUCgCGGgGAUGACC-CCgCGg -3'
miRNA:   3'- -CCCU-GCG--AG-GCCaCUACUGGuGGgGC- -5'
3077 3' -59.5 NC_001493.1 + 61725 0.66 0.790588
Target:  5'- cGGACGaggagCCaGaGAUGGCgCGCCCCGu -3'
miRNA:   3'- cCCUGCga---GGcCaCUACUG-GUGGGGC- -5'
3077 3' -59.5 NC_001493.1 + 124838 0.66 0.790588
Target:  5'- cGGGAgCGCggUCgCGGgGAUGACC-CCgCGg -3'
miRNA:   3'- -CCCU-GCG--AG-GCCaCUACUGGuGGgGC- -5'
3077 3' -59.5 NC_001493.1 + 92980 0.66 0.78168
Target:  5'- gGGGACGCcgUCgGGUGGggcgagcucGACCGugagcgUCCCGa -3'
miRNA:   3'- -CCCUGCG--AGgCCACUa--------CUGGU------GGGGC- -5'
3077 3' -59.5 NC_001493.1 + 101840 0.66 0.78168
Target:  5'- cGGGACGauugggGGUGAUGGgugacaucggUCACCCCa -3'
miRNA:   3'- -CCCUGCgagg--CCACUACU----------GGUGGGGc -5'
3077 3' -59.5 NC_001493.1 + 93389 0.66 0.772646
Target:  5'- cGGGGC-CUCC--UGAUGACCACgUUGg -3'
miRNA:   3'- -CCCUGcGAGGccACUACUGGUGgGGC- -5'
3077 3' -59.5 NC_001493.1 + 52622 0.66 0.772646
Target:  5'- aGGG-UGCUCUGcagGAUGGCCACCa-- -3'
miRNA:   3'- -CCCuGCGAGGCca-CUACUGGUGGggc -5'
3077 3' -59.5 NC_001493.1 + 89613 0.66 0.772646
Target:  5'- cGGugGCaCUGGUGAUGACCGaaCa- -3'
miRNA:   3'- cCCugCGaGGCCACUACUGGUggGgc -5'
3077 3' -59.5 NC_001493.1 + 33650 0.66 0.772646
Target:  5'- uGGGugGUggCGGUGAUGuucaCACaCUCGg -3'
miRNA:   3'- -CCCugCGagGCCACUACug--GUG-GGGC- -5'
3077 3' -59.5 NC_001493.1 + 62873 0.66 0.754232
Target:  5'- gGGGGCGa-CCGGcaccGUGACCACCacgaCGg -3'
miRNA:   3'- -CCCUGCgaGGCCac--UACUGGUGGg---GC- -5'
3077 3' -59.5 NC_001493.1 + 63119 0.66 0.754232
Target:  5'- gGGGGCGa-CCGGcaccGUGACCACCacgaCGg -3'
miRNA:   3'- -CCCUGCgaGGCCac--UACUGGUGGg---GC- -5'
3077 3' -59.5 NC_001493.1 + 63336 0.66 0.754232
Target:  5'- cGGGA-GCgaCCGacaccGUGGUGACCACCacaCCGg -3'
miRNA:   3'- -CCCUgCGa-GGC-----CACUACUGGUGG---GGC- -5'
3077 3' -59.5 NC_001493.1 + 63425 0.66 0.754232
Target:  5'- cGGGA-GCgaCCGacaccGUGGUGACCACCacaCCGg -3'
miRNA:   3'- -CCCUgCGa-GGC-----CACUACUGGUGG---GGC- -5'
3077 3' -59.5 NC_001493.1 + 63551 0.66 0.754232
Target:  5'- cGGGA-GCgaCCGacaccGUGGUGACCACCacaCCGg -3'
miRNA:   3'- -CCCUgCGa-GGC-----CACUACUGGUGG---GGC- -5'
3077 3' -59.5 NC_001493.1 + 63674 0.66 0.754232
Target:  5'- cGGGA-GCgaCCGacaccGUGGUGACCACCacaCCGg -3'
miRNA:   3'- -CCCUgCGa-GGC-----CACUACUGGUGG---GGC- -5'
3077 3' -59.5 NC_001493.1 + 80377 0.66 0.754232
Target:  5'- cGGGAUcuCUCCcacGAgcaGACCGCCCCGg -3'
miRNA:   3'- -CCCUGc-GAGGccaCUa--CUGGUGGGGC- -5'
3077 3' -59.5 NC_001493.1 + 62957 0.66 0.754232
Target:  5'- gGGGGCGa-CCGGcaccGUGACCACCacgaCGg -3'
miRNA:   3'- -CCCUGCgaGGCCac--UACUGGUGGg---GC- -5'
3077 3' -59.5 NC_001493.1 + 52793 0.66 0.744869
Target:  5'- gGGGAgCGC-CCacaUGGUGGCCAUCCUGc -3'
miRNA:   3'- -CCCU-GCGaGGcc-ACUACUGGUGGGGC- -5'
3077 3' -59.5 NC_001493.1 + 87758 0.66 0.744869
Target:  5'- cGGACGggucucUUCCGGUaGUGuCCcCCCCGg -3'
miRNA:   3'- cCCUGC------GAGGCCAcUACuGGuGGGGC- -5'
3077 3' -59.5 NC_001493.1 + 95810 0.67 0.735413
Target:  5'- gGGGugGCUCCuccUGua-ACCGCUCCGg -3'
miRNA:   3'- -CCCugCGAGGcc-ACuacUGGUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.