miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3077 5' -50.1 NC_001493.1 + 113875 0.66 0.994618
Target:  5'- aUCGGGCGGUaGUGgac-CCcGAGCGUc -3'
miRNA:   3'- cAGCCCGCUA-CAUaaaaGGcCUUGCA- -5'
3077 5' -50.1 NC_001493.1 + 31037 0.67 0.985899
Target:  5'- --gGGGCGAUGUGggggacUCUGGAuCGg -3'
miRNA:   3'- cagCCCGCUACAUaaa---AGGCCUuGCa -5'
3077 5' -50.1 NC_001493.1 + 36138 0.68 0.979861
Target:  5'- cGUCGGuGCgGAUGU----UCCGGGugGa -3'
miRNA:   3'- -CAGCC-CG-CUACAuaaaAGGCCUugCa -5'
3077 5' -50.1 NC_001493.1 + 100971 0.69 0.972083
Target:  5'- uUCGGGgGcgGggGUUgucgCCGGAACGa -3'
miRNA:   3'- cAGCCCgCuaCa-UAAaa--GGCCUUGCa -5'
3077 5' -50.1 NC_001493.1 + 124404 0.7 0.950462
Target:  5'- -aCGGGCGGUGUuuauaUUUUCGGcACGa -3'
miRNA:   3'- caGCCCGCUACAua---AAAGGCCuUGCa -5'
3077 5' -50.1 NC_001493.1 + 8850 0.7 0.950462
Target:  5'- -aCGGGCGGUGUuuauaUUUUCGGcACGa -3'
miRNA:   3'- caGCCCGCUACAua---AAAGGCCuUGCa -5'
3077 5' -50.1 NC_001493.1 + 58225 1.08 0.01085
Target:  5'- gGUCGGGCGAUGUAUUUUCCGGAACGUg -3'
miRNA:   3'- -CAGCCCGCUACAUAAAAGGCCUUGCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.