Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3077 | 5' | -50.1 | NC_001493.1 | + | 113875 | 0.66 | 0.994618 |
Target: 5'- aUCGGGCGGUaGUGgac-CCcGAGCGUc -3' miRNA: 3'- cAGCCCGCUA-CAUaaaaGGcCUUGCA- -5' |
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3077 | 5' | -50.1 | NC_001493.1 | + | 31037 | 0.67 | 0.985899 |
Target: 5'- --gGGGCGAUGUGggggacUCUGGAuCGg -3' miRNA: 3'- cagCCCGCUACAUaaa---AGGCCUuGCa -5' |
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3077 | 5' | -50.1 | NC_001493.1 | + | 36138 | 0.68 | 0.979861 |
Target: 5'- cGUCGGuGCgGAUGU----UCCGGGugGa -3' miRNA: 3'- -CAGCC-CG-CUACAuaaaAGGCCUugCa -5' |
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3077 | 5' | -50.1 | NC_001493.1 | + | 100971 | 0.69 | 0.972083 |
Target: 5'- uUCGGGgGcgGggGUUgucgCCGGAACGa -3' miRNA: 3'- cAGCCCgCuaCa-UAAaa--GGCCUUGCa -5' |
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3077 | 5' | -50.1 | NC_001493.1 | + | 124404 | 0.7 | 0.950462 |
Target: 5'- -aCGGGCGGUGUuuauaUUUUCGGcACGa -3' miRNA: 3'- caGCCCGCUACAua---AAAGGCCuUGCa -5' |
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3077 | 5' | -50.1 | NC_001493.1 | + | 8850 | 0.7 | 0.950462 |
Target: 5'- -aCGGGCGGUGUuuauaUUUUCGGcACGa -3' miRNA: 3'- caGCCCGCUACAua---AAAGGCCuUGCa -5' |
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3077 | 5' | -50.1 | NC_001493.1 | + | 58225 | 1.08 | 0.01085 |
Target: 5'- gGUCGGGCGAUGUAUUUUCCGGAACGUg -3' miRNA: 3'- -CAGCCCGCUACAUAAAAGGCCUUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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