miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30771 5' -54.1 NC_006552.1 + 12948 0.66 0.8051
Target:  5'- -gCGCGCUGGCcuuggCCuGGCGguGCGu -3'
miRNA:   3'- caGUGUGACCGua---GGuUCGUguCGCc -5'
30771 5' -54.1 NC_006552.1 + 62354 0.66 0.8051
Target:  5'- -gCGCuACUGGC-UCC-AGCACuccAGUGGa -3'
miRNA:   3'- caGUG-UGACCGuAGGuUCGUG---UCGCC- -5'
30771 5' -54.1 NC_006552.1 + 1832 0.66 0.801255
Target:  5'- gGUCACGgaugcacUUGGCAUguacucaugggcgaUCGAGCACGGCa- -3'
miRNA:   3'- -CAGUGU-------GACCGUA--------------GGUUCGUGUCGcc -5'
30771 5' -54.1 NC_006552.1 + 42037 0.66 0.799322
Target:  5'- cGUCAC-CUGGU-UCCAGGCuucacgcaauacacgGuCGGCGGu -3'
miRNA:   3'- -CAGUGuGACCGuAGGUUCG---------------U-GUCGCC- -5'
30771 5' -54.1 NC_006552.1 + 29242 0.66 0.775598
Target:  5'- gGUCGCcaguaGGCcgCCAGGCuucagAUAGCGGg -3'
miRNA:   3'- -CAGUGuga--CCGuaGGUUCG-----UGUCGCC- -5'
30771 5' -54.1 NC_006552.1 + 11766 0.66 0.775598
Target:  5'- -gCACGCUcGGCAUCCu--CGCGGCu- -3'
miRNA:   3'- caGUGUGA-CCGUAGGuucGUGUCGcc -5'
30771 5' -54.1 NC_006552.1 + 29196 0.66 0.775598
Target:  5'- -gCACgaACUGGCGUUCGuGGCugAuGCGGu -3'
miRNA:   3'- caGUG--UGACCGUAGGU-UCGugU-CGCC- -5'
30771 5' -54.1 NC_006552.1 + 32969 0.68 0.712867
Target:  5'- -gCGCGCgucGGCGUCCuGGCuccCAGCGu -3'
miRNA:   3'- caGUGUGa--CCGUAGGuUCGu--GUCGCc -5'
30771 5' -54.1 NC_006552.1 + 61041 0.68 0.706394
Target:  5'- -gCGCGCUGGCggCCGAGCAUccauaugccgcguugGGCc- -3'
miRNA:   3'- caGUGUGACCGuaGGUUCGUG---------------UCGcc -5'
30771 5' -54.1 NC_006552.1 + 29731 0.68 0.702064
Target:  5'- -cCGCACUacccgGGCAUCgcgCGAGaGCAGCGGu -3'
miRNA:   3'- caGUGUGA-----CCGUAG---GUUCgUGUCGCC- -5'
30771 5' -54.1 NC_006552.1 + 8241 0.68 0.691192
Target:  5'- uGUCgGCGCgggccaUGGUGUCCAGGCuACGGuCGGu -3'
miRNA:   3'- -CAG-UGUG------ACCGUAGGUUCG-UGUC-GCC- -5'
30771 5' -54.1 NC_006552.1 + 51848 0.68 0.680262
Target:  5'- -cCGC-CUGGCcUUCGAGCA-AGCGGa -3'
miRNA:   3'- caGUGuGACCGuAGGUUCGUgUCGCC- -5'
30771 5' -54.1 NC_006552.1 + 46953 0.68 0.669287
Target:  5'- --gGCGgaGGCAUCCGccuGCGCAGCu- -3'
miRNA:   3'- cagUGUgaCCGUAGGUu--CGUGUCGcc -5'
30771 5' -54.1 NC_006552.1 + 18298 0.69 0.647241
Target:  5'- -aCAC-CUGGCcucgcCCGGGCGCAGCa- -3'
miRNA:   3'- caGUGuGACCGua---GGUUCGUGUCGcc -5'
30771 5' -54.1 NC_006552.1 + 56252 0.69 0.647241
Target:  5'- cGUCGCagaACUGGCAgCCAAGgC-CGGCGu -3'
miRNA:   3'- -CAGUG---UGACCGUaGGUUC-GuGUCGCc -5'
30771 5' -54.1 NC_006552.1 + 31104 0.69 0.647241
Target:  5'- aUCACAggGGCGUUCAAGCGgcCGGCa- -3'
miRNA:   3'- cAGUGUgaCCGUAGGUUCGU--GUCGcc -5'
30771 5' -54.1 NC_006552.1 + 25355 0.7 0.592056
Target:  5'- gGUCAUGCUGGUGaucUCCGAGgccacCGCGGCGa -3'
miRNA:   3'- -CAGUGUGACCGU---AGGUUC-----GUGUCGCc -5'
30771 5' -54.1 NC_006552.1 + 50095 0.7 0.570155
Target:  5'- -gCACGCgGGCGgaaCGcgcAGCACGGCGGc -3'
miRNA:   3'- caGUGUGaCCGUag-GU---UCGUGUCGCC- -5'
30771 5' -54.1 NC_006552.1 + 41826 0.71 0.527026
Target:  5'- -gCACACUcugGGCAUCCAgGGUGCGGCu- -3'
miRNA:   3'- caGUGUGA---CCGUAGGU-UCGUGUCGcc -5'
30771 5' -54.1 NC_006552.1 + 11870 0.71 0.516428
Target:  5'- gGUCACAUcgucGGCGaccuucUCCAGGCGC-GCGGc -3'
miRNA:   3'- -CAGUGUGa---CCGU------AGGUUCGUGuCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.