Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30772 | 3' | -54.8 | NC_006552.1 | + | 26008 | 1.09 | 0.001349 |
Target: 5'- cCGGAUCAGCGCCAUCCAGAAAGGCGAc -3' miRNA: 3'- -GCCUAGUCGCGGUAGGUCUUUCCGCU- -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 35697 | 0.66 | 0.798594 |
Target: 5'- uGGAUCGGUGCCAguuUCUGGuccacGAGuGCGc -3' miRNA: 3'- gCCUAGUCGCGGU---AGGUCu----UUC-CGCu -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 9922 | 0.66 | 0.779064 |
Target: 5'- uCGG-UCAGCGCCuugCCGGucuuuuGCGAa -3' miRNA: 3'- -GCCuAGUCGCGGua-GGUCuuuc--CGCU- -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 35526 | 0.66 | 0.769068 |
Target: 5'- uCGGccgCGGUGCCGucuUCCAGcaccuuGGCGAu -3' miRNA: 3'- -GCCua-GUCGCGGU---AGGUCuuu---CCGCU- -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 53596 | 0.66 | 0.758933 |
Target: 5'- cCGGccaguUCGGUGCCG-CCGGcuGAGGUGGa -3' miRNA: 3'- -GCCu----AGUCGCGGUaGGUCu-UUCCGCU- -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 32024 | 0.66 | 0.758933 |
Target: 5'- uCGGc-CAGCGCCAUgUCAGccAGGGGCGu -3' miRNA: 3'- -GCCuaGUCGCGGUA-GGUC--UUUCCGCu -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 20875 | 0.69 | 0.597724 |
Target: 5'- uCGGAUCuguuccAGCGCUuccauGUCCGGcauGGCGAu -3' miRNA: 3'- -GCCUAG------UCGCGG-----UAGGUCuuuCCGCU- -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 48694 | 0.7 | 0.55446 |
Target: 5'- cCGGGUUGGCGCCGUCCGGccc-GCc- -3' miRNA: 3'- -GCCUAGUCGCGGUAGGUCuuucCGcu -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 60689 | 0.72 | 0.413217 |
Target: 5'- -uGGUCcGCGCCAUCCuGGAAGGUa- -3' miRNA: 3'- gcCUAGuCGCGGUAGGuCUUUCCGcu -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 9827 | 0.73 | 0.385005 |
Target: 5'- cCGGGUCcagauucGGC-CCAaCCAGAAAGGUGAg -3' miRNA: 3'- -GCCUAG-------UCGcGGUaGGUCUUUCCGCU- -5' |
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30772 | 3' | -54.8 | NC_006552.1 | + | 25305 | 0.66 | 0.798594 |
Target: 5'- gCGGuGUCGGuCGgCGUCCaAGcuGGGCGGg -3' miRNA: 3'- -GCC-UAGUC-GCgGUAGG-UCuuUCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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