miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30774 5' -53.9 NC_006552.1 + 29026 0.66 0.865913
Target:  5'- cCGCGUGC--CGaAUGCCGAggaaucCCAGCc -3'
miRNA:   3'- -GCGCAUGaaGC-UGCGGCUau----GGUCGc -5'
30774 5' -53.9 NC_006552.1 + 41717 0.66 0.865116
Target:  5'- -cUGUAUcUCGAUGCCGAacUuggucugcuugacGCCAGCGa -3'
miRNA:   3'- gcGCAUGaAGCUGCGGCU--A-------------UGGUCGC- -5'
30774 5' -53.9 NC_006552.1 + 19672 0.66 0.857839
Target:  5'- gGCGUAag-CGAUGuuGGU-CCGGCu -3'
miRNA:   3'- gCGCAUgaaGCUGCggCUAuGGUCGc -5'
30774 5' -53.9 NC_006552.1 + 34358 0.66 0.857839
Target:  5'- uCGgGUGCUgcuuggcguUCGACGCgCGc-GCCAGUGc -3'
miRNA:   3'- -GCgCAUGA---------AGCUGCG-GCuaUGGUCGC- -5'
30774 5' -53.9 NC_006552.1 + 11261 0.66 0.857019
Target:  5'- uCGCGgaucGCgUCGGCcaauaugGCCcAUGCCGGCGg -3'
miRNA:   3'- -GCGCa---UGaAGCUG-------CGGcUAUGGUCGC- -5'
30774 5' -53.9 NC_006552.1 + 12598 0.66 0.856196
Target:  5'- gGUGUGCUUCGucucgaugauguCGCCGGccguagucUGcCCGGCGc -3'
miRNA:   3'- gCGCAUGAAGCu-----------GCGGCU--------AU-GGUCGC- -5'
30774 5' -53.9 NC_006552.1 + 52793 0.66 0.849535
Target:  5'- cCGCccagGCUgUCGAUGCC-AUGCuCAGCGa -3'
miRNA:   3'- -GCGca--UGA-AGCUGCGGcUAUG-GUCGC- -5'
30774 5' -53.9 NC_006552.1 + 28617 0.66 0.841008
Target:  5'- gGCGg--UUCGAUGCCuu--CCAGCGg -3'
miRNA:   3'- gCGCaugAAGCUGCGGcuauGGUCGC- -5'
30774 5' -53.9 NC_006552.1 + 21161 0.66 0.832268
Target:  5'- aCGCGauagGCgcaucCGgccGCGUCGGUGCCGGCa -3'
miRNA:   3'- -GCGCa---UGaa---GC---UGCGGCUAUGGUCGc -5'
30774 5' -53.9 NC_006552.1 + 10765 0.66 0.829605
Target:  5'- gCGCgGUGCUcagggcaugcagaUUGGCGCCGAcggcauugcguCCGGCGa -3'
miRNA:   3'- -GCG-CAUGA-------------AGCUGCGGCUau---------GGUCGC- -5'
30774 5' -53.9 NC_006552.1 + 45383 0.67 0.804854
Target:  5'- gCGCGgcccggGCUcuugcUCGGCGCCGAcgaaUuccccgcccgggGCCGGCGc -3'
miRNA:   3'- -GCGCa-----UGA-----AGCUGCGGCU----A------------UGGUCGC- -5'
30774 5' -53.9 NC_006552.1 + 40568 0.67 0.78568
Target:  5'- cCGCGcGCUUgGugGCCacGUACCAcGCa -3'
miRNA:   3'- -GCGCaUGAAgCugCGGc-UAUGGU-CGc -5'
30774 5' -53.9 NC_006552.1 + 44075 0.67 0.78568
Target:  5'- gCGCGcuuccuCUUCGcCGCCGcgcucuugGCCGGCGc -3'
miRNA:   3'- -GCGCau----GAAGCuGCGGCua------UGGUCGC- -5'
30774 5' -53.9 NC_006552.1 + 22600 0.67 0.775854
Target:  5'- gGCGUACcgggCGuCGCCGAUggcgacauGCaCGGCGu -3'
miRNA:   3'- gCGCAUGaa--GCuGCGGCUA--------UG-GUCGC- -5'
30774 5' -53.9 NC_006552.1 + 32128 0.68 0.765884
Target:  5'- gGCGUACagCGGCuuGCCGGUGCaugcGCGc -3'
miRNA:   3'- gCGCAUGaaGCUG--CGGCUAUGgu--CGC- -5'
30774 5' -53.9 NC_006552.1 + 3569 0.68 0.735213
Target:  5'- aCGCcagGUGCUggcCGAgcCGCCGGcGCCGGCa -3'
miRNA:   3'- -GCG---CAUGAa--GCU--GCGGCUaUGGUCGc -5'
30774 5' -53.9 NC_006552.1 + 33685 0.68 0.724773
Target:  5'- uGCagguCUUCGGCGaCGAaGCCGGCGg -3'
miRNA:   3'- gCGcau-GAAGCUGCgGCUaUGGUCGC- -5'
30774 5' -53.9 NC_006552.1 + 36160 0.69 0.682223
Target:  5'- gGCG-GCaUCGGCGCUGGccucGCCAGCa -3'
miRNA:   3'- gCGCaUGaAGCUGCGGCUa---UGGUCGc -5'
30774 5' -53.9 NC_006552.1 + 57469 0.69 0.671442
Target:  5'- gGCGgagg-UGGCGCCGGUACgGGCu -3'
miRNA:   3'- gCGCaugaaGCUGCGGCUAUGgUCGc -5'
30774 5' -53.9 NC_006552.1 + 59348 0.7 0.649782
Target:  5'- aGCGUcaGCc-CGcCGCCGAUGgCAGCGa -3'
miRNA:   3'- gCGCA--UGaaGCuGCGGCUAUgGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.