miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30775 3' -59.9 NC_006552.1 + 20535 0.66 0.49759
Target:  5'- gCC-GGCcuUGCUCGCGCACCAcaucuaccUGCCu -3'
miRNA:   3'- aGGuUCG--ACGAGCGCGUGGUc-------GCGGu -5'
30775 3' -59.9 NC_006552.1 + 10242 0.66 0.491564
Target:  5'- aUCCGAGuCUGCgugUUGCGCGCCuccaccucuccaGCCAg -3'
miRNA:   3'- -AGGUUC-GACG---AGCGCGUGGucg---------CGGU- -5'
30775 3' -59.9 NC_006552.1 + 26856 0.66 0.487566
Target:  5'- cUCGGGCUcucgccGC-CGCGUugCAGCGCg- -3'
miRNA:   3'- aGGUUCGA------CGaGCGCGugGUCGCGgu -5'
30775 3' -59.9 NC_006552.1 + 38980 0.66 0.487566
Target:  5'- gCCAGGUUGUUCGgGUcguacucgACCAcGCgGCCAu -3'
miRNA:   3'- aGGUUCGACGAGCgCG--------UGGU-CG-CGGU- -5'
30775 3' -59.9 NC_006552.1 + 64641 0.66 0.477638
Target:  5'- gCCGAcGCUGUUCGcCGCGCC-GCcgGUCAg -3'
miRNA:   3'- aGGUU-CGACGAGC-GCGUGGuCG--CGGU- -5'
30775 3' -59.9 NC_006552.1 + 63207 0.66 0.467812
Target:  5'- gUCCuGGCcGCaacggugaacccUCGCgGCACguGCGCCGg -3'
miRNA:   3'- -AGGuUCGaCG------------AGCG-CGUGguCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 20191 0.66 0.467812
Target:  5'- -aCGcGCUGCUgGUugaucuGCcCCAGCGCCAc -3'
miRNA:   3'- agGUuCGACGAgCG------CGuGGUCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 51170 0.66 0.45809
Target:  5'- gCCGAGaagGCcCGCGCcaaAGCGCCAg -3'
miRNA:   3'- aGGUUCga-CGaGCGCGuggUCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 26313 0.66 0.457124
Target:  5'- gCCAacAGCaGCUCGC-CACCAuucgcucGCGUCAg -3'
miRNA:   3'- aGGU--UCGaCGAGCGcGUGGU-------CGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 62946 0.66 0.448477
Target:  5'- aUCAGuGCcGCUgaCGCGCacgaacugGCCGGCGCCGu -3'
miRNA:   3'- aGGUU-CGaCGA--GCGCG--------UGGUCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 22576 0.66 0.448477
Target:  5'- aUCCuGGCccgucucguagaUGCUgGCGUACCgGGCGUCGc -3'
miRNA:   3'- -AGGuUCG------------ACGAgCGCGUGG-UCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 36073 0.67 0.429593
Target:  5'- gCCcuGUUGgUCGCcaccagccgaaGCGCCGGCGUCAc -3'
miRNA:   3'- aGGuuCGACgAGCG-----------CGUGGUCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 12997 0.67 0.42773
Target:  5'- aCguAGCUGCUCGgGCcguagcugcggcCCAGCGCa- -3'
miRNA:   3'- aGguUCGACGAGCgCGu-----------GGUCGCGgu -5'
30775 3' -59.9 NC_006552.1 + 10841 0.67 0.420328
Target:  5'- gCCGGGCUGCg-GCGCugCcgacucuucGGCuGCCGg -3'
miRNA:   3'- aGGUUCGACGagCGCGugG---------UCG-CGGU- -5'
30775 3' -59.9 NC_006552.1 + 28400 0.67 0.411185
Target:  5'- aUCC-GGCgGCUCGaUGCugUAGCGCg- -3'
miRNA:   3'- -AGGuUCGaCGAGC-GCGugGUCGCGgu -5'
30775 3' -59.9 NC_006552.1 + 63479 0.67 0.411185
Target:  5'- uUCC--GCUGC-CgGC-CGCCGGCGCCGg -3'
miRNA:   3'- -AGGuuCGACGaG-CGcGUGGUCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 59470 0.67 0.411185
Target:  5'- gCUGAGCUGCUgGUGa---GGCGCCAc -3'
miRNA:   3'- aGGUUCGACGAgCGCguggUCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 54118 0.67 0.411185
Target:  5'- -gCAGGCU-CUgGCGCAUCgucugAGCGCCGg -3'
miRNA:   3'- agGUUCGAcGAgCGCGUGG-----UCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 41216 0.67 0.402166
Target:  5'- gCCGAGCUGacgCGCcuugaggaucagGUugCGGUGCCAu -3'
miRNA:   3'- aGGUUCGACga-GCG------------CGugGUCGCGGU- -5'
30775 3' -59.9 NC_006552.1 + 21855 0.67 0.390631
Target:  5'- aCCAGGUcGCgCGCcgccagaugguccaGCACCAGCGCg- -3'
miRNA:   3'- aGGUUCGaCGaGCG--------------CGUGGUCGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.