miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30778 5' -62.3 NC_006552.1 + 5696 0.66 0.457348
Target:  5'- cGGCUGAUUCGCgGCG-GUCGC-GGCGa -3'
miRNA:   3'- -CCGGUUGAGUG-CGCgCGGCGgCCGCc -5'
30778 5' -62.3 NC_006552.1 + 53516 0.66 0.457348
Target:  5'- uGGUggaGGCUCAcCGCGCGauGCCGGaCGc -3'
miRNA:   3'- -CCGg--UUGAGU-GCGCGCggCGGCC-GCc -5'
30778 5' -62.3 NC_006552.1 + 11462 0.66 0.454578
Target:  5'- cGCUAcgaACUCGCGCaGUgcagagcgguacucGCUGCCGGUGa -3'
miRNA:   3'- cCGGU---UGAGUGCG-CG--------------CGGCGGCCGCc -5'
30778 5' -62.3 NC_006552.1 + 44873 0.66 0.453656
Target:  5'- aGCCAGgUCuugaaccaugaguUGgGCaGCgGCCGGCGGa -3'
miRNA:   3'- cCGGUUgAGu------------GCgCG-CGgCGGCCGCC- -5'
30778 5' -62.3 NC_006552.1 + 39776 0.66 0.448148
Target:  5'- cGGUCAGCg---GCGUGUCGCCcgcaGGUGGc -3'
miRNA:   3'- -CCGGUUGagugCGCGCGGCGG----CCGCC- -5'
30778 5' -62.3 NC_006552.1 + 53293 0.66 0.448148
Target:  5'- -aUCAACggcCGCGCaGC-CCGCCGcGCGGc -3'
miRNA:   3'- ccGGUUGa--GUGCG-CGcGGCGGC-CGCC- -5'
30778 5' -62.3 NC_006552.1 + 56443 0.66 0.439051
Target:  5'- uGGgCGAUUCAaccaugccuCGUGgGCCGCCcugucaggcagGGCGGc -3'
miRNA:   3'- -CCgGUUGAGU---------GCGCgCGGCGG-----------CCGCC- -5'
30778 5' -62.3 NC_006552.1 + 56806 0.66 0.439051
Target:  5'- cGGaUCcGCUCGaGCGCGCC--CGGCGGa -3'
miRNA:   3'- -CC-GGuUGAGUgCGCGCGGcgGCCGCC- -5'
30778 5' -62.3 NC_006552.1 + 11196 0.66 0.433644
Target:  5'- uGGCCuccagcAACUCGCG-GCGuUCGCCGGaaagcuccaccacuuCGGg -3'
miRNA:   3'- -CCGG------UUGAGUGCgCGC-GGCGGCC---------------GCC- -5'
30778 5' -62.3 NC_006552.1 + 12672 0.66 0.430061
Target:  5'- uGGCCuGCUCACGCaGgGCC-UUGGUGc -3'
miRNA:   3'- -CCGGuUGAGUGCG-CgCGGcGGCCGCc -5'
30778 5' -62.3 NC_006552.1 + 50283 0.66 0.430061
Target:  5'- aGCCAAaugcgaCugGCGC-CCGCCgGGCGc -3'
miRNA:   3'- cCGGUUga----GugCGCGcGGCGG-CCGCc -5'
30778 5' -62.3 NC_006552.1 + 1007 0.66 0.430061
Target:  5'- gGGCCAccaACgaaCGCGCcucgucacgGCGCUGCCGGgCa- -3'
miRNA:   3'- -CCGGU---UGa--GUGCG---------CGCGGCGGCC-Gcc -5'
30778 5' -62.3 NC_006552.1 + 64267 0.66 0.429167
Target:  5'- cGGaCCAGCagagaACgGCGCGCUGUucugucaccacugCGGCGGa -3'
miRNA:   3'- -CC-GGUUGag---UG-CGCGCGGCG-------------GCCGCC- -5'
30778 5' -62.3 NC_006552.1 + 31630 0.66 0.421179
Target:  5'- aGGUCuuggagcgcACUCcUGCGCGCUGCU-GCGGg -3'
miRNA:   3'- -CCGGu--------UGAGuGCGCGCGGCGGcCGCC- -5'
30778 5' -62.3 NC_006552.1 + 12885 0.66 0.421179
Target:  5'- cGGCgAcCUCggcgGCGUGCGCCuugaugucgucGUCGGUGGu -3'
miRNA:   3'- -CCGgUuGAG----UGCGCGCGG-----------CGGCCGCC- -5'
30778 5' -62.3 NC_006552.1 + 44405 0.66 0.421179
Target:  5'- -cCCGGCgauUGCGCuGCCgGCCGGCGa -3'
miRNA:   3'- ccGGUUGaguGCGCG-CGG-CGGCCGCc -5'
30778 5' -62.3 NC_006552.1 + 29056 0.66 0.412409
Target:  5'- uGG-CGGCUCcaagaaGCGCGUGCCGCCGaccauaGGu -3'
miRNA:   3'- -CCgGUUGAG------UGCGCGCGGCGGCcg----CC- -5'
30778 5' -62.3 NC_006552.1 + 13221 0.67 0.403753
Target:  5'- cGCCuccccACUgCGCGCGCGCUGCaugagGGCu- -3'
miRNA:   3'- cCGGu----UGA-GUGCGCGCGGCGg----CCGcc -5'
30778 5' -62.3 NC_006552.1 + 36099 0.67 0.403753
Target:  5'- cGCCGGCgUCACcCGCGCCcuGCUGcGCGc -3'
miRNA:   3'- cCGGUUG-AGUGcGCGCGG--CGGC-CGCc -5'
30778 5' -62.3 NC_006552.1 + 51103 0.67 0.403753
Target:  5'- cGCaCAACUCgACGCGauCGCCG-CGGCa- -3'
miRNA:   3'- cCG-GUUGAG-UGCGC--GCGGCgGCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.