miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30779 5' -57.2 NC_006552.1 + 22135 0.66 0.681798
Target:  5'- cGUGGcACcGUCCACcgucaGGCCGCGCacGCg -3'
miRNA:   3'- -CAUCuUGcCAGGUGa----CCGGUGCGc-CG- -5'
30779 5' -57.2 NC_006552.1 + 15010 0.66 0.681798
Target:  5'- gGUAGGcuuCGGcgCCAgUGGCuucagCACGCGGg -3'
miRNA:   3'- -CAUCUu--GCCa-GGUgACCG-----GUGCGCCg -5'
30779 5' -57.2 NC_006552.1 + 40960 0.66 0.680735
Target:  5'- gGUGGAuggugcCGGaCCGCauggacgUGGCCACGC-GCa -3'
miRNA:   3'- -CAUCUu-----GCCaGGUG-------ACCGGUGCGcCG- -5'
30779 5' -57.2 NC_006552.1 + 12937 0.66 0.671145
Target:  5'- -aAGcuCGG-CCAgcgcgcuggccUUGGCCugGCGGUg -3'
miRNA:   3'- caUCuuGCCaGGU-----------GACCGGugCGCCG- -5'
30779 5' -57.2 NC_006552.1 + 8263 0.66 0.660457
Target:  5'- -cAGGcuACGGUCgG-UGGCgGCGCGGa -3'
miRNA:   3'- caUCU--UGCCAGgUgACCGgUGCGCCg -5'
30779 5' -57.2 NC_006552.1 + 52598 0.66 0.639015
Target:  5'- aGUGGAACGG-CCAagacGGCCugcCGcCGGUc -3'
miRNA:   3'- -CAUCUUGCCaGGUga--CCGGu--GC-GCCG- -5'
30779 5' -57.2 NC_006552.1 + 45187 0.67 0.606829
Target:  5'- cGUAGAacGCGG-CCACcuuUGGC-GCGuCGGCc -3'
miRNA:   3'- -CAUCU--UGCCaGGUG---ACCGgUGC-GCCG- -5'
30779 5' -57.2 NC_006552.1 + 58609 0.67 0.574829
Target:  5'- --uGGugGGcgUCGgUGGCCGCGCcgGGCa -3'
miRNA:   3'- cauCUugCCa-GGUgACCGGUGCG--CCG- -5'
30779 5' -57.2 NC_006552.1 + 59539 0.68 0.564242
Target:  5'- -gGGGACGGUCgAUuccugaUGGCCAucccUGCGGa -3'
miRNA:   3'- caUCUUGCCAGgUG------ACCGGU----GCGCCg -5'
30779 5' -57.2 NC_006552.1 + 54943 0.68 0.553706
Target:  5'- -aGGAGCGGg-CACUGGaCgACGCuGGUa -3'
miRNA:   3'- caUCUUGCCagGUGACC-GgUGCG-CCG- -5'
30779 5' -57.2 NC_006552.1 + 2637 0.68 0.54323
Target:  5'- aUGGGgcugGCGGcCCuuCUGGgcuagggaCCGCGCGGCg -3'
miRNA:   3'- cAUCU----UGCCaGGu-GACC--------GGUGCGCCG- -5'
30779 5' -57.2 NC_006552.1 + 12628 0.68 0.54323
Target:  5'- cGUAGucugccCGG--CGCUGGCUACGCGGg -3'
miRNA:   3'- -CAUCuu----GCCagGUGACCGGUGCGCCg -5'
30779 5' -57.2 NC_006552.1 + 57829 0.68 0.522482
Target:  5'- -aGGGACaGGUCCACcGGUCGaGUGGUc -3'
miRNA:   3'- caUCUUG-CCAGGUGaCCGGUgCGCCG- -5'
30779 5' -57.2 NC_006552.1 + 44190 0.69 0.501034
Target:  5'- ---cGACGGUCCAUgucuucgcgcucgUGGCgCAgGUGGCg -3'
miRNA:   3'- caucUUGCCAGGUG-------------ACCG-GUgCGCCG- -5'
30779 5' -57.2 NC_006552.1 + 33529 0.69 0.472077
Target:  5'- cUGGAACuGGUgCGCaGGCgCGCaGCGGCc -3'
miRNA:   3'- cAUCUUG-CCAgGUGaCCG-GUG-CGCCG- -5'
30779 5' -57.2 NC_006552.1 + 53295 0.7 0.415035
Target:  5'- ---cAACGG-CCGCgcagcccGCCGCGCGGCg -3'
miRNA:   3'- caucUUGCCaGGUGac-----CGGUGCGCCG- -5'
30779 5' -57.2 NC_006552.1 + 42986 0.7 0.405944
Target:  5'- -cGGAGCGGa-UACUGGUCG-GCGGCg -3'
miRNA:   3'- caUCUUGCCagGUGACCGGUgCGCCG- -5'
30779 5' -57.2 NC_006552.1 + 52551 0.71 0.388144
Target:  5'- gGUGGAACGucGUCCugUGGCUgAUGaGGCa -3'
miRNA:   3'- -CAUCUUGC--CAGGugACCGG-UGCgCCG- -5'
30779 5' -57.2 NC_006552.1 + 23669 1.11 0.00058
Target:  5'- aGUAGAACGGUCCACUGGCCACGCGGCu -3'
miRNA:   3'- -CAUCUUGCCAGGUGACCGGUGCGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.