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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30780 | 5' | -54.6 | NC_006552.1 | + | 25287 | 0.67 | 0.703542 |
Target: 5'- uUGUCgauggACCG-GGUaGCGGUGUcgGUc -3' miRNA: 3'- cACAGa----UGGCaCCA-CGCCACGuaCAu -5' |
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30780 | 5' | -54.6 | NC_006552.1 | + | 23208 | 1.07 | 0.001646 |
Target: 5'- aGUGUCUACCGUGGUGCGGUGCAUGUAa -3' miRNA: 3'- -CACAGAUGGCACCACGCCACGUACAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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