Results 21 - 38 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 24935 | 0.66 | 0.644701 |
Target: 5'- aCCGCuGGGCAGaucccaACGCGCUuCAGGCu -3' miRNA: 3'- cGGUG-CCUGUCcg----UGUGUGA-GUCCGc -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 24324 | 0.68 | 0.532323 |
Target: 5'- aGCCAUGGGCuguuacuugagucgaAGGC-CACAC-CAuGGCa -3' miRNA: 3'- -CGGUGCCUG---------------UCCGuGUGUGaGU-CCGc -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 22720 | 1.09 | 0.000693 |
Target: 5'- gGCCACGGACAGGCACACACUCAGGCGc -3' miRNA: 3'- -CGGUGCCUGUCCGUGUGUGAGUCCGC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 19732 | 0.66 | 0.612574 |
Target: 5'- gGCCACGuuGGCGcuGGCcgcuGCGCGC-CAGGCu -3' miRNA: 3'- -CGGUGC--CUGU--CCG----UGUGUGaGUCCGc -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 17135 | 0.79 | 0.109677 |
Target: 5'- gGCCACGGAUAGGCcaaggucGCGCGCaugcccgaUCAGGCc -3' miRNA: 3'- -CGGUGCCUGUCCG-------UGUGUG--------AGUCCGc -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 14485 | 0.71 | 0.342675 |
Target: 5'- gGUCGCGGAUGGGgGCAU-C-CAGGCGg -3' miRNA: 3'- -CGGUGCCUGUCCgUGUGuGaGUCCGC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 14347 | 0.74 | 0.225666 |
Target: 5'- cGCCGCGcGGCuucuucuuAGGCACAUcaggagcugcugGCUCAGGCu -3' miRNA: 3'- -CGGUGC-CUG--------UCCGUGUG------------UGAGUCCGc -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 13820 | 0.71 | 0.359008 |
Target: 5'- aGCCGCuguaGGuGCcGGCGCGCACguucaUCAGGCGc -3' miRNA: 3'- -CGGUG----CC-UGuCCGUGUGUG-----AGUCCGC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 13169 | 0.66 | 0.64363 |
Target: 5'- cGUCGCGGGCGuucuGCGUACGCUCGaaugccuGGCGg -3' miRNA: 3'- -CGGUGCCUGUc---CGUGUGUGAGU-------CCGC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 11735 | 0.69 | 0.464884 |
Target: 5'- gGCCuugcCGGugAGGCcggagcggcgaaugGCACGCUC-GGCa -3' miRNA: 3'- -CGGu---GCCugUCCG--------------UGUGUGAGuCCGc -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 8427 | 0.68 | 0.496583 |
Target: 5'- gGCCGCGc-CAGGCGCGCAgcaguccCUCGGGa- -3' miRNA: 3'- -CGGUGCcuGUCCGUGUGU-------GAGUCCgc -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 8251 | 0.66 | 0.612574 |
Target: 5'- gGCCAUGGugucCAGGC-UACGgUCGguGGCGg -3' miRNA: 3'- -CGGUGCCu---GUCCGuGUGUgAGU--CCGC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 5673 | 0.66 | 0.6554 |
Target: 5'- gGCCucgauGCGGGCAGcGCucucgGCugAUUCGcGGCGg -3' miRNA: 3'- -CGG-----UGCCUGUC-CG-----UGugUGAGU-CCGC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 5593 | 0.72 | 0.31164 |
Target: 5'- cGCCGaagcCGGcCAGGCugACGgUCAGcGCGg -3' miRNA: 3'- -CGGU----GCCuGUCCGugUGUgAGUC-CGC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 2658 | 0.67 | 0.570001 |
Target: 5'- gGCUAgGGACcgcgcGGCGCcgaucaACGCUCGGGuCGa -3' miRNA: 3'- -CGGUgCCUGu----CCGUG------UGUGAGUCC-GC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 2042 | 0.79 | 0.109979 |
Target: 5'- cGCCugGGACAGGCGCuugaGCGCgccGGCGu -3' miRNA: 3'- -CGGugCCUGUCCGUG----UGUGaguCCGC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 1832 | 0.69 | 0.467812 |
Target: 5'- gGUCACGGAUgcacuuGGCAUGUACUCauGGGCGa -3' miRNA: 3'- -CGGUGCCUGu-----CCGUGUGUGAG--UCCGC- -5' |
|||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 1028 | 0.66 | 0.63399 |
Target: 5'- cGUCACGGcgcugcCGGGCAU-CACgCAGGCu -3' miRNA: 3'- -CGGUGCCu-----GUCCGUGuGUGaGUCCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home