miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30781 5' -57.6 NC_006552.1 + 1028 0.66 0.63399
Target:  5'- cGUCACGGcgcugcCGGGCAU-CACgCAGGCu -3'
miRNA:   3'- -CGGUGCCu-----GUCCGUGuGUGaGUCCGc -5'
30781 5' -57.6 NC_006552.1 + 1832 0.69 0.467812
Target:  5'- gGUCACGGAUgcacuuGGCAUGUACUCauGGGCGa -3'
miRNA:   3'- -CGGUGCCUGu-----CCGUGUGUGAG--UCCGC- -5'
30781 5' -57.6 NC_006552.1 + 2042 0.79 0.109979
Target:  5'- cGCCugGGACAGGCGCuugaGCGCgccGGCGu -3'
miRNA:   3'- -CGGugCCUGUCCGUG----UGUGaguCCGC- -5'
30781 5' -57.6 NC_006552.1 + 2658 0.67 0.570001
Target:  5'- gGCUAgGGACcgcgcGGCGCcgaucaACGCUCGGGuCGa -3'
miRNA:   3'- -CGGUgCCUGu----CCGUG------UGUGAGUCC-GC- -5'
30781 5' -57.6 NC_006552.1 + 5593 0.72 0.31164
Target:  5'- cGCCGaagcCGGcCAGGCugACGgUCAGcGCGg -3'
miRNA:   3'- -CGGU----GCCuGUCCGugUGUgAGUC-CGC- -5'
30781 5' -57.6 NC_006552.1 + 5673 0.66 0.6554
Target:  5'- gGCCucgauGCGGGCAGcGCucucgGCugAUUCGcGGCGg -3'
miRNA:   3'- -CGG-----UGCCUGUC-CG-----UGugUGAGU-CCGC- -5'
30781 5' -57.6 NC_006552.1 + 8251 0.66 0.612574
Target:  5'- gGCCAUGGugucCAGGC-UACGgUCGguGGCGg -3'
miRNA:   3'- -CGGUGCCu---GUCCGuGUGUgAGU--CCGC- -5'
30781 5' -57.6 NC_006552.1 + 8427 0.68 0.496583
Target:  5'- gGCCGCGc-CAGGCGCGCAgcaguccCUCGGGa- -3'
miRNA:   3'- -CGGUGCcuGUCCGUGUGU-------GAGUCCgc -5'
30781 5' -57.6 NC_006552.1 + 11735 0.69 0.464884
Target:  5'- gGCCuugcCGGugAGGCcggagcggcgaaugGCACGCUC-GGCa -3'
miRNA:   3'- -CGGu---GCCugUCCG--------------UGUGUGAGuCCGc -5'
30781 5' -57.6 NC_006552.1 + 13169 0.66 0.64363
Target:  5'- cGUCGCGGGCGuucuGCGUACGCUCGaaugccuGGCGg -3'
miRNA:   3'- -CGGUGCCUGUc---CGUGUGUGAGU-------CCGC- -5'
30781 5' -57.6 NC_006552.1 + 13820 0.71 0.359008
Target:  5'- aGCCGCuguaGGuGCcGGCGCGCACguucaUCAGGCGc -3'
miRNA:   3'- -CGGUG----CC-UGuCCGUGUGUG-----AGUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 14347 0.74 0.225666
Target:  5'- cGCCGCGcGGCuucuucuuAGGCACAUcaggagcugcugGCUCAGGCu -3'
miRNA:   3'- -CGGUGC-CUG--------UCCGUGUG------------UGAGUCCGc -5'
30781 5' -57.6 NC_006552.1 + 14485 0.71 0.342675
Target:  5'- gGUCGCGGAUGGGgGCAU-C-CAGGCGg -3'
miRNA:   3'- -CGGUGCCUGUCCgUGUGuGaGUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 17135 0.79 0.109677
Target:  5'- gGCCACGGAUAGGCcaaggucGCGCGCaugcccgaUCAGGCc -3'
miRNA:   3'- -CGGUGCCUGUCCG-------UGUGUG--------AGUCCGc -5'
30781 5' -57.6 NC_006552.1 + 19732 0.66 0.612574
Target:  5'- gGCCACGuuGGCGcuGGCcgcuGCGCGC-CAGGCu -3'
miRNA:   3'- -CGGUGC--CUGU--CCG----UGUGUGaGUCCGc -5'
30781 5' -57.6 NC_006552.1 + 22720 1.09 0.000693
Target:  5'- gGCCACGGACAGGCACACACUCAGGCGc -3'
miRNA:   3'- -CGGUGCCUGUCCGUGUGUGAGUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 24324 0.68 0.532323
Target:  5'- aGCCAUGGGCuguuacuugagucgaAGGC-CACAC-CAuGGCa -3'
miRNA:   3'- -CGGUGCCUG---------------UCCGuGUGUGaGU-CCGc -5'
30781 5' -57.6 NC_006552.1 + 24935 0.66 0.644701
Target:  5'- aCCGCuGGGCAGaucccaACGCGCUuCAGGCu -3'
miRNA:   3'- cGGUG-CCUGUCcg----UGUGUGA-GUCCGc -5'
30781 5' -57.6 NC_006552.1 + 25940 0.66 0.63399
Target:  5'- cGgCAgGGACAGGacuGCACuAC-CAGGCa -3'
miRNA:   3'- -CgGUgCCUGUCCg--UGUG-UGaGUCCGc -5'
30781 5' -57.6 NC_006552.1 + 27048 0.68 0.487566
Target:  5'- uGCCACGGACuGGGCAUuuggaccCGgUgGGGUGa -3'
miRNA:   3'- -CGGUGCCUG-UCCGUGu------GUgAgUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.