miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30785 3' -58.7 NC_006552.1 + 63945 0.66 0.564242
Target:  5'- aGCGgcauGCCcCGGACAgcaaucugguGGCGC-GCGCCAc -3'
miRNA:   3'- -CGC----UGGaGCUUGU----------CCGCGaCGCGGUa -5'
30785 3' -58.7 NC_006552.1 + 34133 0.66 0.552656
Target:  5'- -aGugCUCGGAugccgccCAGGC-UUGCGCCAg -3'
miRNA:   3'- cgCugGAGCUU-------GUCCGcGACGCGGUa -5'
30785 3' -58.7 NC_006552.1 + 41226 0.66 0.53282
Target:  5'- cGCG-CCUUGAGgauCAGGuUGCgGUGCCAUa -3'
miRNA:   3'- -CGCuGGAGCUU---GUCC-GCGaCGCGGUA- -5'
30785 3' -58.7 NC_006552.1 + 38225 0.66 0.53282
Target:  5'- aGCaGAUCaUUGGACAGGUagGCgGCGCCGg -3'
miRNA:   3'- -CG-CUGG-AGCUUGUCCG--CGaCGCGGUa -5'
30785 3' -58.7 NC_006552.1 + 6342 0.66 0.53282
Target:  5'- aGCGGCCUCGAGCA--CGUUGgUGUCGa -3'
miRNA:   3'- -CGCUGGAGCUUGUccGCGAC-GCGGUa -5'
30785 3' -58.7 NC_006552.1 + 15703 0.66 0.531783
Target:  5'- cGCGGCCUCGAuacgcuuCAcGCGCUcaccgacGCGCUg- -3'
miRNA:   3'- -CGCUGGAGCUu------GUcCGCGA-------CGCGGua -5'
30785 3' -58.7 NC_006552.1 + 31892 0.66 0.522482
Target:  5'- aGCGGCUUCGGcCA-GCGCgGCGCgGUu -3'
miRNA:   3'- -CGCUGGAGCUuGUcCGCGaCGCGgUA- -5'
30785 3' -58.7 NC_006552.1 + 64497 0.66 0.522482
Target:  5'- gGCGGCCU--GGCAGGCGggGUGCUu- -3'
miRNA:   3'- -CGCUGGAgcUUGUCCGCgaCGCGGua -5'
30785 3' -58.7 NC_006552.1 + 33552 0.67 0.491961
Target:  5'- aGCGGCCgacaGcAGCAGGC-CaGCGCCGa -3'
miRNA:   3'- -CGCUGGag--C-UUGUCCGcGaCGCGGUa -5'
30785 3' -58.7 NC_006552.1 + 7221 0.67 0.491961
Target:  5'- aGCGAgCCgcugccGCGGGC-CUGCGCCAUc -3'
miRNA:   3'- -CGCU-GGagcu--UGUCCGcGACGCGGUA- -5'
30785 3' -58.7 NC_006552.1 + 59371 0.67 0.46913
Target:  5'- aGCGAUCgcgCGAGCcaacgauccauggaGGGCGCggcaGCGUCAg -3'
miRNA:   3'- -CGCUGGa--GCUUG--------------UCCGCGa---CGCGGUa -5'
30785 3' -58.7 NC_006552.1 + 15104 0.67 0.46913
Target:  5'- uGCGgcuucgccagguucGCCUCGAACuGGCGC-GCGUUg- -3'
miRNA:   3'- -CGC--------------UGGAGCUUGuCCGCGaCGCGGua -5'
30785 3' -58.7 NC_006552.1 + 7865 0.68 0.427969
Target:  5'- cGCuuCCUCGGACAgGGUGCccuggcucacggugGCGCCAg -3'
miRNA:   3'- -CGcuGGAGCUUGU-CCGCGa-------------CGCGGUa -5'
30785 3' -58.7 NC_006552.1 + 33498 0.68 0.415035
Target:  5'- gGCGuCCUUGGGCAGcGCGaacaGCGCCu- -3'
miRNA:   3'- -CGCuGGAGCUUGUC-CGCga--CGCGGua -5'
30785 3' -58.7 NC_006552.1 + 46718 0.69 0.39698
Target:  5'- cUGAUCUgGAGCAGGCGaaGCGCa-- -3'
miRNA:   3'- cGCUGGAgCUUGUCCGCgaCGCGgua -5'
30785 3' -58.7 NC_006552.1 + 50155 0.69 0.379438
Target:  5'- uCGcCCUgGAGCAGGCGUacUGCGCg-- -3'
miRNA:   3'- cGCuGGAgCUUGUCCGCG--ACGCGgua -5'
30785 3' -58.7 NC_006552.1 + 18302 0.69 0.374278
Target:  5'- cUGGCCUCGccCGGGCGCagcacuggaacuugGCGCCGc -3'
miRNA:   3'- cGCUGGAGCuuGUCCGCGa-------------CGCGGUa -5'
30785 3' -58.7 NC_006552.1 + 60256 0.7 0.354117
Target:  5'- cGCGGCCgCGcGCGGGCuuucccGCcGCGCCAc -3'
miRNA:   3'- -CGCUGGaGCuUGUCCG------CGaCGCGGUa -5'
30785 3' -58.7 NC_006552.1 + 7309 0.7 0.337911
Target:  5'- -gGGCCagguccgguUCGAACugauaGGaGCGCUGCGCCAUc -3'
miRNA:   3'- cgCUGG---------AGCUUG-----UC-CGCGACGCGGUA- -5'
30785 3' -58.7 NC_006552.1 + 11882 0.7 0.314626
Target:  5'- gGCGACCUUcucCAGGCGC-GCgGCCAa -3'
miRNA:   3'- -CGCUGGAGcuuGUCCGCGaCG-CGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.