miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30786 5' -58.4 NC_006552.1 + 55281 0.66 0.577761
Target:  5'- uCUUCCAGGGCGAgUCcgGgGCCUacccguucagcgGCUGg -3'
miRNA:   3'- cGGAGGUCUCGCU-AGa-CgCGGA------------CGAC- -5'
30786 5' -58.4 NC_006552.1 + 53394 0.66 0.555495
Target:  5'- cGCCUUCAaggaaucGGGUGAgaaguUCUGCaCCUGCUa -3'
miRNA:   3'- -CGGAGGU-------CUCGCU-----AGACGcGGACGAc -5'
30786 5' -58.4 NC_006552.1 + 31625 0.66 0.534528
Target:  5'- -gCUCCaggucuuGGAGCGcacucCUGCGCgCUGCUGc -3'
miRNA:   3'- cgGAGG-------UCUCGCua---GACGCG-GACGAC- -5'
30786 5' -58.4 NC_006552.1 + 44649 0.67 0.494509
Target:  5'- cCCUUCAuGAGCGGUgCgGCuaccacagccGCCUGCUGg -3'
miRNA:   3'- cGGAGGU-CUCGCUA-GaCG----------CGGACGAC- -5'
30786 5' -58.4 NC_006552.1 + 7557 0.68 0.426422
Target:  5'- uCCUUCAGuuCGccCUGCGCCUGCg- -3'
miRNA:   3'- cGGAGGUCucGCuaGACGCGGACGac -5'
30786 5' -58.4 NC_006552.1 + 59972 0.68 0.424558
Target:  5'- cGCC-CUAGcggauguucaccGCGAUCUGCGCgccCUGCUGu -3'
miRNA:   3'- -CGGaGGUCu-----------CGCUAGACGCG---GACGAC- -5'
30786 5' -58.4 NC_006552.1 + 1344 0.7 0.364219
Target:  5'- aGCC-CCGGAGUua-CUGCGCUUGCg- -3'
miRNA:   3'- -CGGaGGUCUCGcuaGACGCGGACGac -5'
30786 5' -58.4 NC_006552.1 + 17701 0.7 0.339552
Target:  5'- uCCUgUAGAGCcgcgcgcuGAUUUGCGCCcUGCUGu -3'
miRNA:   3'- cGGAgGUCUCG--------CUAGACGCGG-ACGAC- -5'
30786 5' -58.4 NC_006552.1 + 15469 0.7 0.331603
Target:  5'- cGCCagcgauacagCCGGuuguGCGGcUUGCGCCUGCUGc -3'
miRNA:   3'- -CGGa---------GGUCu---CGCUaGACGCGGACGAC- -5'
30786 5' -58.4 NC_006552.1 + 32638 0.72 0.240726
Target:  5'- uCCUCCuugcGAGCGcgcuccugCUGgGCCUGCUGa -3'
miRNA:   3'- cGGAGGu---CUCGCua------GACgCGGACGAC- -5'
30786 5' -58.4 NC_006552.1 + 19600 1.1 0.000481
Target:  5'- cGCCUCCAGAGCGAUCUGCGCCUGCUGu -3'
miRNA:   3'- -CGGAGGUCUCGCUAGACGCGGACGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.