Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3079 | 3' | -63.9 | NC_001493.1 | + | 80213 | 0.67 | 0.462032 |
Target: 5'- -uCCGGggCGGUCuGCUCGUGGGA-GAg -3' miRNA: 3'- auGGCCa-GCCAGcCGGGCGCCCUgCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 16257 | 0.67 | 0.462032 |
Target: 5'- -cUCGaG-CGGUCGaGCCC-CGGGACGGc -3' miRNA: 3'- auGGC-CaGCCAGC-CGGGcGCCCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 133194 | 0.68 | 0.445471 |
Target: 5'- gUACCGGgcccacguccucaaGGUUaucaaGGCCCGUGGGACc- -3' miRNA: 3'- -AUGGCCag------------CCAG-----CCGGGCGCCCUGcu -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 17639 | 0.68 | 0.445471 |
Target: 5'- gUACCGGgcccacguccucaaGGUUaucaaGGCCCGUGGGACc- -3' miRNA: 3'- -AUGGCCag------------CCAG-----CCGGGCGCCCUGcu -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 24170 | 0.69 | 0.394655 |
Target: 5'- aACCGGUugaCGGUgGgGUCCagGUGGGGCGAg -3' miRNA: 3'- aUGGCCA---GCCAgC-CGGG--CGCCCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 11202 | 0.69 | 0.363433 |
Target: 5'- cACgGGUC-GUCGaGCCCuCGGGAUGAc -3' miRNA: 3'- aUGgCCAGcCAGC-CGGGcGCCCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 126756 | 0.69 | 0.363433 |
Target: 5'- cACgGGUC-GUCGaGCCCuCGGGAUGAc -3' miRNA: 3'- aUGgCCAGcCAGC-CGGGcGCCCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 96253 | 0.7 | 0.333966 |
Target: 5'- aUAUCGGaugaaUCGGggccguaGcGCCCGCGGGAUGAc -3' miRNA: 3'- -AUGGCC-----AGCCag-----C-CGGGCGCCCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 64260 | 0.7 | 0.319903 |
Target: 5'- aGCuCGGUCuc-CGGCCCGgGGGugGGa -3' miRNA: 3'- aUG-GCCAGccaGCCGGGCgCCCugCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 81776 | 0.71 | 0.306287 |
Target: 5'- -uCCGaGUCGGUCauGGCUCGCGcGACGGa -3' miRNA: 3'- auGGC-CAGCCAG--CCGGGCGCcCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 58653 | 1.06 | 0.000914 |
Target: 5'- aUACCGGUCGGUCGGCCCGCGGGACGAc -3' miRNA: 3'- -AUGGCCAGCCAGCCGGGCGCCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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