miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3079 5' -58.5 NC_001493.1 + 113153 0.66 0.783723
Target:  5'- -aUCGUCuCUGCGGUGAUcccagagGCAUACCc- -3'
miRNA:   3'- aaGGCAG-GGCGCCACUG-------UGUGUGGac -5'
3079 5' -58.5 NC_001493.1 + 67484 0.66 0.766045
Target:  5'- -cCCGUCCCGUucauguacuGGUauGACAUGCuCCUGc -3'
miRNA:   3'- aaGGCAGGGCG---------CCA--CUGUGUGuGGAC- -5'
3079 5' -58.5 NC_001493.1 + 30927 0.67 0.727509
Target:  5'- -aCCGUCCCggugcggccGCGGUGACgGCGCggucggcgGCCUu -3'
miRNA:   3'- aaGGCAGGG---------CGCCACUG-UGUG--------UGGAc -5'
3079 5' -58.5 NC_001493.1 + 63788 0.67 0.707714
Target:  5'- --aCGgcaCCGCGGUGACcacCACACCg- -3'
miRNA:   3'- aagGCag-GGCGCCACUGu--GUGUGGac -5'
3079 5' -58.5 NC_001493.1 + 63328 0.67 0.687664
Target:  5'- -aCCGaCaCCGUGGUGACcacCACACCg- -3'
miRNA:   3'- aaGGCaG-GGCGCCACUGu--GUGUGGac -5'
3079 5' -58.5 NC_001493.1 + 63372 0.67 0.687664
Target:  5'- -aCCG-CaCCGUGGUGACcacCACACCg- -3'
miRNA:   3'- aaGGCaG-GGCGCCACUGu--GUGUGGac -5'
3079 5' -58.5 NC_001493.1 + 63417 0.67 0.687664
Target:  5'- -aCCGaCaCCGUGGUGACcacCACACCg- -3'
miRNA:   3'- aaGGCaG-GGCGCCACUGu--GUGUGGac -5'
3079 5' -58.5 NC_001493.1 + 63462 0.67 0.687664
Target:  5'- -aCCGaCaCCGUGGUGACcacCACACCg- -3'
miRNA:   3'- aaGGCaG-GGCGCCACUGu--GUGUGGac -5'
3079 5' -58.5 NC_001493.1 + 63543 0.67 0.687664
Target:  5'- -aCCGaCaCCGUGGUGACcacCACACCg- -3'
miRNA:   3'- aaGGCaG-GGCGCCACUGu--GUGUGGac -5'
3079 5' -58.5 NC_001493.1 + 63666 0.67 0.687664
Target:  5'- -aCCGaCaCCGUGGUGACcacCACACCg- -3'
miRNA:   3'- aaGGCaG-GGCGCCACUGu--GUGUGGac -5'
3079 5' -58.5 NC_001493.1 + 89198 0.67 0.687664
Target:  5'- gUCC-UCCCcauguacgcgcGUGGUGACucCGCGCCUGu -3'
miRNA:   3'- aAGGcAGGG-----------CGCCACUGu-GUGUGGAC- -5'
3079 5' -58.5 NC_001493.1 + 119442 0.67 0.687664
Target:  5'- gUCCGUCCgGggugaGGUGGCAU-CGCCUa -3'
miRNA:   3'- aAGGCAGGgCg----CCACUGUGuGUGGAc -5'
3079 5' -58.5 NC_001493.1 + 3888 0.67 0.687664
Target:  5'- gUCCGUCCgGggugaGGUGGCAU-CGCCUa -3'
miRNA:   3'- aAGGCAGGgCg----CCACUGUGuGUGGAc -5'
3079 5' -58.5 NC_001493.1 + 100189 0.69 0.565843
Target:  5'- gUUCgGUCCCGCGGUccugagcuGAUccgucauaaaACugGCCUGg -3'
miRNA:   3'- -AAGgCAGGGCGCCA--------CUG----------UGugUGGAC- -5'
3079 5' -58.5 NC_001493.1 + 58690 1.05 0.002537
Target:  5'- gUUCCGUCCCGCGGUGACACACACCUGu -3'
miRNA:   3'- -AAGGCAGGGCGCCACUGUGUGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.