miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30792 5' -58.1 NC_006552.1 + 15152 1.08 0.000636
Target:  5'- cCGCGCAAGCGCGCUUCAUCCAGGGCAu -3'
miRNA:   3'- -GCGCGUUCGCGCGAAGUAGGUCCCGU- -5'
30792 5' -58.1 NC_006552.1 + 31579 0.66 0.591426
Target:  5'- aGCGCuGGCGgGCauagUCAUagAGGGUAu -3'
miRNA:   3'- gCGCGuUCGCgCGa---AGUAggUCCCGU- -5'
30792 5' -58.1 NC_006552.1 + 15020 0.66 0.591426
Target:  5'- gGCGCcAGUG-GCUUCAgcaCgCGGGGCu -3'
miRNA:   3'- gCGCGuUCGCgCGAAGUa--G-GUCCCGu -5'
30792 5' -58.1 NC_006552.1 + 17957 0.66 0.584993
Target:  5'- gCGCGcCGAGUuaccgGCGUUguacugagccaacgCGUCCGGGGCc -3'
miRNA:   3'- -GCGC-GUUCG-----CGCGAa-------------GUAGGUCCCGu -5'
30792 5' -58.1 NC_006552.1 + 31639 0.66 0.580712
Target:  5'- aGCGCAcuccuGCGCGCUgc-UgCGGGGUu -3'
miRNA:   3'- gCGCGUu----CGCGCGAaguAgGUCCCGu -5'
30792 5' -58.1 NC_006552.1 + 20631 0.66 0.579643
Target:  5'- cCGCGCGGGUG-GUUUCG-CCAcugucgcguucgcGGGCAc -3'
miRNA:   3'- -GCGCGUUCGCgCGAAGUaGGU-------------CCCGU- -5'
30792 5' -58.1 NC_006552.1 + 15797 0.67 0.538341
Target:  5'- uCGCGCucGGCGauuuucuuCGCguccCAUCCAGuGGCAc -3'
miRNA:   3'- -GCGCGu-UCGC--------GCGaa--GUAGGUC-CCGU- -5'
30792 5' -58.1 NC_006552.1 + 33539 0.67 0.517546
Target:  5'- uGCGCAGGCGCGCagCggCCGacaGCAg -3'
miRNA:   3'- gCGCGUUCGCGCGaaGuaGGUcc-CGU- -5'
30792 5' -58.1 NC_006552.1 + 15569 0.68 0.447621
Target:  5'- uGCuGCu-GCGcCGCcUgGUCCAGGGCGa -3'
miRNA:   3'- gCG-CGuuCGC-GCGaAgUAGGUCCCGU- -5'
30792 5' -58.1 NC_006552.1 + 62491 0.68 0.437108
Target:  5'- gCGCGCugaAGGUGaucgccaCGCUUCGccgCCAGGGCu -3'
miRNA:   3'- -GCGCG---UUCGC-------GCGAAGUa--GGUCCCGu -5'
30792 5' -58.1 NC_006552.1 + 52945 0.7 0.374578
Target:  5'- uGCGCcGGCGCccgccgccgguGCggCAUCCGGGuGCGc -3'
miRNA:   3'- gCGCGuUCGCG-----------CGaaGUAGGUCC-CGU- -5'
30792 5' -58.1 NC_006552.1 + 3014 0.7 0.374578
Target:  5'- gCGCGCgGAGCagaucGUGCUcCA-CCAGGGCGa -3'
miRNA:   3'- -GCGCG-UUCG-----CGCGAaGUaGGUCCCGU- -5'
30792 5' -58.1 NC_006552.1 + 43362 0.71 0.325348
Target:  5'- gGCacuCAGGuCGUGCUUCcuccgaccAUCCAGGGCAu -3'
miRNA:   3'- gCGc--GUUC-GCGCGAAG--------UAGGUCCCGU- -5'
30792 5' -58.1 NC_006552.1 + 23155 0.71 0.318392
Target:  5'- uCGCGCucgaacaccggcaccAGCGcCGCcaCGUCCAGGGUAa -3'
miRNA:   3'- -GCGCGu--------------UCGC-GCGaaGUAGGUCCCGU- -5'
30792 5' -58.1 NC_006552.1 + 9391 0.74 0.201236
Target:  5'- cCGCGCAcgucgccccgugcGGCGCGCUUCAUgCCAGccaucgcguaGGCc -3'
miRNA:   3'- -GCGCGU-------------UCGCGCGAAGUA-GGUC----------CCGu -5'
30792 5' -58.1 NC_006552.1 + 42304 0.75 0.167651
Target:  5'- gCGUGCAgaaacuccgguAGCGCGCUUCuucgcuaCCGGGGCc -3'
miRNA:   3'- -GCGCGU-----------UCGCGCGAAGua-----GGUCCCGu -5'
30792 5' -58.1 NC_006552.1 + 8429 0.66 0.591426
Target:  5'- cCGCGcCAGGCGCGCagcaGUCCcucGGGa- -3'
miRNA:   3'- -GCGC-GUUCGCGCGaag-UAGGu--CCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.