miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30793 5' -57.2 NC_006552.1 + 19287 0.66 0.663091
Target:  5'- uUCCGGUccCcgGGCCaGUCACGCGcCc -3'
miRNA:   3'- cAGGUCGu-GuaCCGG-CAGUGCGCuGu -5'
30793 5' -57.2 NC_006552.1 + 13688 0.66 0.652307
Target:  5'- cGUCCAGUGCcgccUGGCg--CACGCGAUc -3'
miRNA:   3'- -CAGGUCGUGu---ACCGgcaGUGCGCUGu -5'
30793 5' -57.2 NC_006552.1 + 33372 0.66 0.641505
Target:  5'- -gCCAGCACG-GGCCGgcccuucguaGgGCGGCGg -3'
miRNA:   3'- caGGUCGUGUaCCGGCag--------UgCGCUGU- -5'
30793 5' -57.2 NC_006552.1 + 45793 0.66 0.641505
Target:  5'- uGUCCGGCu--UGuCCGUCAgcaGCGGCAa -3'
miRNA:   3'- -CAGGUCGuguACcGGCAGUg--CGCUGU- -5'
30793 5' -57.2 NC_006552.1 + 22143 0.66 0.630695
Target:  5'- cGUCCAcCGuCA-GGCCGcgCACGCGAUc -3'
miRNA:   3'- -CAGGUcGU-GUaCCGGCa-GUGCGCUGu -5'
30793 5' -57.2 NC_006552.1 + 63031 0.66 0.609088
Target:  5'- -cCCAGCGCAaccUGGCCGcCAUccuCGACc -3'
miRNA:   3'- caGGUCGUGU---ACCGGCaGUGc--GCUGu -5'
30793 5' -57.2 NC_006552.1 + 27917 0.67 0.566171
Target:  5'- uGUCCGGCGCccGGaugcCUGUCGCGUaagGACGu -3'
miRNA:   3'- -CAGGUCGUGuaCC----GGCAGUGCG---CUGU- -5'
30793 5' -57.2 NC_006552.1 + 20820 0.67 0.555551
Target:  5'- cGUCCGGCgGCGUGGC-GUCgaACGUaGGCAa -3'
miRNA:   3'- -CAGGUCG-UGUACCGgCAG--UGCG-CUGU- -5'
30793 5' -57.2 NC_006552.1 + 43733 0.68 0.503467
Target:  5'- cUCCGGCACGaGGCgCGaCACGCGcCc -3'
miRNA:   3'- cAGGUCGUGUaCCG-GCaGUGCGCuGu -5'
30793 5' -57.2 NC_006552.1 + 15748 0.69 0.463378
Target:  5'- -gCCGGCAUccGGCgGUgGCGCGAg- -3'
miRNA:   3'- caGGUCGUGuaCCGgCAgUGCGCUgu -5'
30793 5' -57.2 NC_006552.1 + 32194 0.72 0.32224
Target:  5'- cUUCAGCaccgGCAUGGUCGg-GCGCGACAu -3'
miRNA:   3'- cAGGUCG----UGUACCGGCagUGCGCUGU- -5'
30793 5' -57.2 NC_006552.1 + 21673 0.73 0.285241
Target:  5'- cGUCCAGCGCAUaaacGCCGUCuucgGCGAUg -3'
miRNA:   3'- -CAGGUCGUGUAc---CGGCAGug--CGCUGu -5'
30793 5' -57.2 NC_006552.1 + 20957 0.82 0.062717
Target:  5'- cGUCCGGCACcgggAUGGCCGUCAUGCucGGCGc -3'
miRNA:   3'- -CAGGUCGUG----UACCGGCAGUGCG--CUGU- -5'
30793 5' -57.2 NC_006552.1 + 14563 1.08 0.000861
Target:  5'- cGUCCAGCACAUGGCCGUCACGCGACAc -3'
miRNA:   3'- -CAGGUCGUGUACCGGCAGUGCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.