miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30798 3' -51.2 NC_006552.1 + 30087 0.66 0.941002
Target:  5'- cGGGUAGCagGCUGgccagccuGGUCCAc-GACGGu- -3'
miRNA:   3'- -CCCAUCG--CGAC--------CCAGGUauUUGCUug -5'
30798 3' -51.2 NC_006552.1 + 42206 0.66 0.918388
Target:  5'- uGGGUcGCGUUcaGGUCUAccagguauuccUGGACGAACg -3'
miRNA:   3'- -CCCAuCGCGAc-CCAGGU-----------AUUUGCUUG- -5'
30798 3' -51.2 NC_006552.1 + 41051 0.68 0.850351
Target:  5'- aGGGaAGCGCUcgcggauuuccucGGGcagguugUCGUAGGCGAACu -3'
miRNA:   3'- -CCCaUCGCGA-------------CCCa------GGUAUUUGCUUG- -5'
30798 3' -51.2 NC_006552.1 + 33180 0.69 0.824297
Target:  5'- gGGGUGGUGuCUGGGuugUCCA-GGugGAGu -3'
miRNA:   3'- -CCCAUCGC-GACCC---AGGUaUUugCUUg -5'
30798 3' -51.2 NC_006552.1 + 25299 0.69 0.823366
Target:  5'- cGGGUAGCGgUgucggucGGcGUCCAagcUGGGCGggUa -3'
miRNA:   3'- -CCCAUCGCgA-------CC-CAGGU---AUUUGCuuG- -5'
30798 3' -51.2 NC_006552.1 + 15641 0.7 0.733455
Target:  5'- uGGUGGCGCUGcucauccugcuGGUCCuc-GGCGAGg -3'
miRNA:   3'- cCCAUCGCGAC-----------CCAGGuauUUGCUUg -5'
30798 3' -51.2 NC_006552.1 + 10918 1.12 0.002017
Target:  5'- cGGGUAGCGCUGGGUCCAUAAACGAACc -3'
miRNA:   3'- -CCCAUCGCGACCCAGGUAUUUGCUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.