miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30799 3' -54.3 NC_006552.1 + 55921 0.66 0.849302
Target:  5'- --gGCCugucGCCGGagAUCcCGGCGGACa -3'
miRNA:   3'- ccaCGGu---CGGCCa-UAGaGCUGCUUGc -5'
30799 3' -54.3 NC_006552.1 + 4509 0.66 0.849302
Target:  5'- cGGcUGCCAGCCa-----UCGGCGAugGc -3'
miRNA:   3'- -CC-ACGGUCGGccauagAGCUGCUugC- -5'
30799 3' -54.3 NC_006552.1 + 44418 0.66 0.840806
Target:  5'- -cUGCCGGCCGGcgaaaccggCUCGAguacgugcuguuCGAGCa -3'
miRNA:   3'- ccACGGUCGGCCaua------GAGCU------------GCUUGc -5'
30799 3' -54.3 NC_006552.1 + 25306 0.66 0.832099
Target:  5'- cGGUGUCGGUCGGcguccaagCUgGGCGggUa -3'
miRNA:   3'- -CCACGGUCGGCCaua-----GAgCUGCuuGc -5'
30799 3' -54.3 NC_006552.1 + 35349 0.66 0.823188
Target:  5'- cGGuUGCCAGCCGGaggCUUGcCGccCGg -3'
miRNA:   3'- -CC-ACGGUCGGCCauaGAGCuGCuuGC- -5'
30799 3' -54.3 NC_006552.1 + 31270 0.67 0.7857
Target:  5'- gGGUGaucggcaGGCCGGUagccGUgUCGAUGAAUGc -3'
miRNA:   3'- -CCACgg-----UCGGCCA----UAgAGCUGCUUGC- -5'
30799 3' -54.3 NC_006552.1 + 39863 0.68 0.745749
Target:  5'- --cGCCAGUCGGUGggCUCGGCu---- -3'
miRNA:   3'- ccaCGGUCGGCCAUa-GAGCUGcuugc -5'
30799 3' -54.3 NC_006552.1 + 33237 0.68 0.745749
Target:  5'- -aUGUCuuCCGGgcaCUCGGCGAACGg -3'
miRNA:   3'- ccACGGucGGCCauaGAGCUGCUUGC- -5'
30799 3' -54.3 NC_006552.1 + 25793 0.69 0.639593
Target:  5'- aGGUaccgGCaCGGCCGGUGaugC-CGGCGAGCa -3'
miRNA:   3'- -CCA----CG-GUCGGCCAUa--GaGCUGCUUGc -5'
30799 3' -54.3 NC_006552.1 + 45363 0.7 0.596374
Target:  5'- -aUGUCGGCCGGUAUCU-GGC-AGCGc -3'
miRNA:   3'- ccACGGUCGGCCAUAGAgCUGcUUGC- -5'
30799 3' -54.3 NC_006552.1 + 21394 0.72 0.491408
Target:  5'- cGUGCCGGCCGGUcaggCGAagcgUGAACGu -3'
miRNA:   3'- cCACGGUCGGCCAuagaGCU----GCUUGC- -5'
30799 3' -54.3 NC_006552.1 + 5267 0.72 0.481344
Target:  5'- --cGCCuGCCGGUAguugC-CGGCGAGCa -3'
miRNA:   3'- ccaCGGuCGGCCAUa---GaGCUGCUUGc -5'
30799 3' -54.3 NC_006552.1 + 10704 1.12 0.001078
Target:  5'- cGGUGCCAGCCGGUAUCUCGACGAACGg -3'
miRNA:   3'- -CCACGGUCGGCCAUAGAGCUGCUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.