Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30799 | 5' | -59.7 | NC_006552.1 | + | 22402 | 0.66 | 0.490744 |
Target: 5'- cUCGCUgAUGcGCGcgGUGCUucGCUGaCGg -3' miRNA: 3'- aAGCGGgUAC-CGCuaCGCGA--CGAC-GC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 10341 | 0.66 | 0.477735 |
Target: 5'- -cCGCCCAUGGCGAaaccuucccggaucUGUaucGCaUGCUGg- -3' miRNA: 3'- aaGCGGGUACCGCU--------------ACG---CG-ACGACgc -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 22612 | 0.66 | 0.451279 |
Target: 5'- gUCGCCgAUGGCGAcaUGCaCgGCgucGCGg -3' miRNA: 3'- aAGCGGgUACCGCU--ACGcGaCGa--CGC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 11962 | 0.67 | 0.404508 |
Target: 5'- --aGCgCAUGGCGGUGUGCUGgggaagGUGg -3' miRNA: 3'- aagCGgGUACCGCUACGCGACga----CGC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 62734 | 0.68 | 0.381426 |
Target: 5'- -aUGCCCAacuacuaccccaagGGCGG-GCGCUGCcGCGc -3' miRNA: 3'- aaGCGGGUa-------------CCGCUaCGCGACGaCGC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 15548 | 0.68 | 0.360914 |
Target: 5'- -aCGCCgAuUGGCGucgggGCuuGCUGCUGCGc -3' miRNA: 3'- aaGCGGgU-ACCGCua---CG--CGACGACGC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 13744 | 0.68 | 0.360914 |
Target: 5'- -gUGUCgAUGGCGcggucguagGCGCUGUUGCGc -3' miRNA: 3'- aaGCGGgUACCGCua-------CGCGACGACGC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 44403 | 0.68 | 0.344417 |
Target: 5'- --aGCCC--GGCGAuUGCGCUGCcggccgGCGa -3' miRNA: 3'- aagCGGGuaCCGCU-ACGCGACGa-----CGC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 18307 | 0.69 | 0.318399 |
Target: 5'- cUCGCCCG-GGCGcagcacuggaacuugGCGCcGCUGCa -3' miRNA: 3'- aAGCGGGUaCCGCua-------------CGCGaCGACGc -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 40117 | 0.7 | 0.291017 |
Target: 5'- -aCGCCCGUcaccaguucGGUGAUGCGCgGCacgaugGCGa -3' miRNA: 3'- aaGCGGGUA---------CCGCUACGCGaCGa-----CGC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 62442 | 0.7 | 0.291017 |
Target: 5'- -gUGCCCGccGGCGuuccgGCGCcGCUGCGc -3' miRNA: 3'- aaGCGGGUa-CCGCua---CGCGaCGACGC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 61874 | 0.71 | 0.238183 |
Target: 5'- --aGCCCA-GGCuGAauUGCGCcgGCUGCGg -3' miRNA: 3'- aagCGGGUaCCG-CU--ACGCGa-CGACGC- -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 35879 | 0.78 | 0.074259 |
Target: 5'- cUCGCCUgccGUGGCGc-GCGCUGCUGCc -3' miRNA: 3'- aAGCGGG---UACCGCuaCGCGACGACGc -5' |
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30799 | 5' | -59.7 | NC_006552.1 | + | 10741 | 1.05 | 0.000669 |
Target: 5'- uUUCGCCCAUGGCGAUGCGCUGCUGCGc -3' miRNA: 3'- -AAGCGGGUACCGCUACGCGACGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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