miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30799 5' -59.7 NC_006552.1 + 22402 0.66 0.490744
Target:  5'- cUCGCUgAUGcGCGcgGUGCUucGCUGaCGg -3'
miRNA:   3'- aAGCGGgUAC-CGCuaCGCGA--CGAC-GC- -5'
30799 5' -59.7 NC_006552.1 + 10341 0.66 0.477735
Target:  5'- -cCGCCCAUGGCGAaaccuucccggaucUGUaucGCaUGCUGg- -3'
miRNA:   3'- aaGCGGGUACCGCU--------------ACG---CG-ACGACgc -5'
30799 5' -59.7 NC_006552.1 + 22612 0.66 0.451279
Target:  5'- gUCGCCgAUGGCGAcaUGCaCgGCgucGCGg -3'
miRNA:   3'- aAGCGGgUACCGCU--ACGcGaCGa--CGC- -5'
30799 5' -59.7 NC_006552.1 + 11962 0.67 0.404508
Target:  5'- --aGCgCAUGGCGGUGUGCUGgggaagGUGg -3'
miRNA:   3'- aagCGgGUACCGCUACGCGACga----CGC- -5'
30799 5' -59.7 NC_006552.1 + 62734 0.68 0.381426
Target:  5'- -aUGCCCAacuacuaccccaagGGCGG-GCGCUGCcGCGc -3'
miRNA:   3'- aaGCGGGUa-------------CCGCUaCGCGACGaCGC- -5'
30799 5' -59.7 NC_006552.1 + 13744 0.68 0.360914
Target:  5'- -gUGUCgAUGGCGcggucguagGCGCUGUUGCGc -3'
miRNA:   3'- aaGCGGgUACCGCua-------CGCGACGACGC- -5'
30799 5' -59.7 NC_006552.1 + 15548 0.68 0.360914
Target:  5'- -aCGCCgAuUGGCGucgggGCuuGCUGCUGCGc -3'
miRNA:   3'- aaGCGGgU-ACCGCua---CG--CGACGACGC- -5'
30799 5' -59.7 NC_006552.1 + 44403 0.68 0.344417
Target:  5'- --aGCCC--GGCGAuUGCGCUGCcggccgGCGa -3'
miRNA:   3'- aagCGGGuaCCGCU-ACGCGACGa-----CGC- -5'
30799 5' -59.7 NC_006552.1 + 18307 0.69 0.318399
Target:  5'- cUCGCCCG-GGCGcagcacuggaacuugGCGCcGCUGCa -3'
miRNA:   3'- aAGCGGGUaCCGCua-------------CGCGaCGACGc -5'
30799 5' -59.7 NC_006552.1 + 62442 0.7 0.291017
Target:  5'- -gUGCCCGccGGCGuuccgGCGCcGCUGCGc -3'
miRNA:   3'- aaGCGGGUa-CCGCua---CGCGaCGACGC- -5'
30799 5' -59.7 NC_006552.1 + 40117 0.7 0.291017
Target:  5'- -aCGCCCGUcaccaguucGGUGAUGCGCgGCacgaugGCGa -3'
miRNA:   3'- aaGCGGGUA---------CCGCUACGCGaCGa-----CGC- -5'
30799 5' -59.7 NC_006552.1 + 61874 0.71 0.238183
Target:  5'- --aGCCCA-GGCuGAauUGCGCcgGCUGCGg -3'
miRNA:   3'- aagCGGGUaCCG-CU--ACGCGa-CGACGC- -5'
30799 5' -59.7 NC_006552.1 + 35879 0.78 0.074259
Target:  5'- cUCGCCUgccGUGGCGc-GCGCUGCUGCc -3'
miRNA:   3'- aAGCGGG---UACCGCuaCGCGACGACGc -5'
30799 5' -59.7 NC_006552.1 + 10741 1.05 0.000669
Target:  5'- uUUCGCCCAUGGCGAUGCGCUGCUGCGc -3'
miRNA:   3'- -AAGCGGGUACCGCUACGCGACGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.