miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30800 3' -60 NC_006552.1 + 32641 0.66 0.514501
Target:  5'- uCCUUGCgaG-CGCGCUCCuGC-UGGg -3'
miRNA:   3'- -GGGACGgaCgGUGCGAGGuCGuACCa -5'
30800 3' -60 NC_006552.1 + 5805 0.66 0.514501
Target:  5'- gCCCaacgcGCCcGCaaggGCGCcagCCAGCGUGGUc -3'
miRNA:   3'- -GGGa----CGGaCGg---UGCGa--GGUCGUACCA- -5'
30800 3' -60 NC_006552.1 + 45053 0.66 0.474602
Target:  5'- cUCCUGCUggcgUGCCuGCGUUCCGGUGgucGGg -3'
miRNA:   3'- -GGGACGG----ACGG-UGCGAGGUCGUa--CCa -5'
30800 3' -60 NC_006552.1 + 52607 0.67 0.44572
Target:  5'- gCCaagacgGCCUGCCGCcggUCGGCGUGGa -3'
miRNA:   3'- -GGga----CGGACGGUGcgaGGUCGUACCa -5'
30800 3' -60 NC_006552.1 + 34760 0.67 0.44572
Target:  5'- ---cGCCgGCCAgGUgaaCCAGCAUGGa -3'
miRNA:   3'- gggaCGGaCGGUgCGa--GGUCGUACCa -5'
30800 3' -60 NC_006552.1 + 5231 0.67 0.44572
Target:  5'- gCCUGCCUgGUUGCGCcacUUCAGCA-GGUc -3'
miRNA:   3'- gGGACGGA-CGGUGCG---AGGUCGUaCCA- -5'
30800 3' -60 NC_006552.1 + 32842 0.67 0.405205
Target:  5'- uCCCgcggGCCgauguacuugaugGgCACGCcguuaUCCAGCAUGGg -3'
miRNA:   3'- -GGGa---CGGa------------CgGUGCG-----AGGUCGUACCa -5'
30800 3' -60 NC_006552.1 + 20561 0.68 0.357132
Target:  5'- aCCUGCCUGgCGaGCaUCCccggcGGCAUGGa -3'
miRNA:   3'- gGGACGGACgGUgCG-AGG-----UCGUACCa -5'
30800 3' -60 NC_006552.1 + 58197 0.71 0.255204
Target:  5'- gCCCUgGCCgaaGCCACGCUgC-GCcgGGUg -3'
miRNA:   3'- -GGGA-CGGa--CGGUGCGAgGuCGuaCCA- -5'
30800 3' -60 NC_006552.1 + 3342 0.72 0.203149
Target:  5'- aCCUGCCUGUCGaGCUUCAGCGUc-- -3'
miRNA:   3'- gGGACGGACGGUgCGAGGUCGUAcca -5'
30800 3' -60 NC_006552.1 + 10010 1.08 0.000464
Target:  5'- gCCCUGCCUGCCACGCUCCAGCAUGGUc -3'
miRNA:   3'- -GGGACGGACGGUGCGAGGUCGUACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.