miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30803 3' -58.2 NC_006552.1 + 17919 0.66 0.665087
Target:  5'- aUCGGCCCGAgagcUAUCGGGaaccaCGGuuaCCCg -3'
miRNA:   3'- -GGCCGGGCUau--GUAGCUC-----GCCuc-GGG- -5'
30803 3' -58.2 NC_006552.1 + 25803 0.66 0.644118
Target:  5'- aCGGCCggUGAUGCcggCGAGCac-GCCCg -3'
miRNA:   3'- gGCCGG--GCUAUGua-GCUCGccuCGGG- -5'
30803 3' -58.2 NC_006552.1 + 28405 0.66 0.644118
Target:  5'- gCGGCUCGAUGCugu-AGCGcGGCUCg -3'
miRNA:   3'- gGCCGGGCUAUGuagcUCGCcUCGGG- -5'
30803 3' -58.2 NC_006552.1 + 50235 0.67 0.590623
Target:  5'- gCGGCCCGAaGCGcaaUCGAcaaaGCcaagggaGGGGCCUc -3'
miRNA:   3'- gGCCGGGCUaUGU---AGCU----CG-------CCUCGGG- -5'
30803 3' -58.2 NC_006552.1 + 19957 0.67 0.570849
Target:  5'- gCGGCCUGc-GCAUCGAGCac-GUCCg -3'
miRNA:   3'- gGCCGGGCuaUGUAGCUCGccuCGGG- -5'
30803 3' -58.2 NC_006552.1 + 52967 0.67 0.570849
Target:  5'- gCGGCauCCGGgugcgcguuCAUCGAGCGcGcAGCCUg -3'
miRNA:   3'- gGCCG--GGCUau-------GUAGCUCGC-C-UCGGG- -5'
30803 3' -58.2 NC_006552.1 + 21927 0.68 0.547137
Target:  5'- aCGGCCUGAUgcGCGUCcaccaccucgucgcGAG-GGAcGCCCc -3'
miRNA:   3'- gGCCGGGCUA--UGUAG--------------CUCgCCU-CGGG- -5'
30803 3' -58.2 NC_006552.1 + 60896 0.68 0.53998
Target:  5'- aCCGGCgCUGGcAUAUCGGGCGGAc--- -3'
miRNA:   3'- -GGCCG-GGCUaUGUAGCUCGCCUcggg -5'
30803 3' -58.2 NC_006552.1 + 40011 0.68 0.529813
Target:  5'- cUCGGCgCGGUugAacuUCuuGCGGuAGCCCu -3'
miRNA:   3'- -GGCCGgGCUAugU---AGcuCGCC-UCGGG- -5'
30803 3' -58.2 NC_006552.1 + 65094 0.68 0.499757
Target:  5'- gCCGGCgCCG--GCAaaCGaAGCGGgAGCCCc -3'
miRNA:   3'- -GGCCG-GGCuaUGUa-GC-UCGCC-UCGGG- -5'
30803 3' -58.2 NC_006552.1 + 129 0.68 0.499757
Target:  5'- gCUGGCCCucGAUcaACGUCGuGuCGuAGCCCa -3'
miRNA:   3'- -GGCCGGG--CUA--UGUAGCuC-GCcUCGGG- -5'
30803 3' -58.2 NC_006552.1 + 12289 0.69 0.480146
Target:  5'- aUCGGCCCGcu-CGUUGAGgGccuGAGCCa -3'
miRNA:   3'- -GGCCGGGCuauGUAGCUCgC---CUCGGg -5'
30803 3' -58.2 NC_006552.1 + 45273 0.69 0.470481
Target:  5'- aCCGGCCaagCGGUGUAUCGAGUGcGAuagGCCa -3'
miRNA:   3'- -GGCCGG---GCUAUGUAGCUCGC-CU---CGGg -5'
30803 3' -58.2 NC_006552.1 + 12386 0.69 0.451457
Target:  5'- aCGGCCUGc-GCGUCG-GCGGugucGCCUg -3'
miRNA:   3'- gGCCGGGCuaUGUAGCuCGCCu---CGGG- -5'
30803 3' -58.2 NC_006552.1 + 18620 0.69 0.442104
Target:  5'- aCCaGCCgCuuUGgGUCGAGCaGGGCCCg -3'
miRNA:   3'- -GGcCGG-GcuAUgUAGCUCGcCUCGGG- -5'
30803 3' -58.2 NC_006552.1 + 57240 0.7 0.388403
Target:  5'- aCUGGCaCCGcc---UCGAGCGGAacGCCCu -3'
miRNA:   3'- -GGCCG-GGCuauguAGCUCGCCU--CGGG- -5'
30803 3' -58.2 NC_006552.1 + 39607 0.72 0.329878
Target:  5'- gCCGGgCCGAU-CAggucuuccacugCGGGCGGGauGCCCa -3'
miRNA:   3'- -GGCCgGGCUAuGUa-----------GCUCGCCU--CGGG- -5'
30803 3' -58.2 NC_006552.1 + 49857 0.72 0.301715
Target:  5'- aCCGGCUCGAcGCcgCGu-CGGAcGCCCg -3'
miRNA:   3'- -GGCCGGGCUaUGuaGCucGCCU-CGGG- -5'
30803 3' -58.2 NC_006552.1 + 28287 0.72 0.301715
Target:  5'- cUCGGCCCGAUcGCGUUGAaGUGGAucgacagaGCCg -3'
miRNA:   3'- -GGCCGGGCUA-UGUAGCU-CGCCU--------CGGg -5'
30803 3' -58.2 NC_006552.1 + 6620 1.12 0.00049
Target:  5'- gCCGGCCCGAUACAUCGAGCGGAGCCCc -3'
miRNA:   3'- -GGCCGGGCUAUGUAGCUCGCCUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.