miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30803 5' -53.1 NC_006552.1 + 30659 0.66 0.891683
Target:  5'- gUCGGcCACCCagGCGGUguaGAUGucGUCg -3'
miRNA:   3'- -GGCCuGUGGGg-CGCUAg--UUACuuCAG- -5'
30803 5' -53.1 NC_006552.1 + 15214 0.66 0.884392
Target:  5'- gCCGGuCGCCuuGCGGUUggUGu---- -3'
miRNA:   3'- -GGCCuGUGGggCGCUAGuuACuucag -5'
30803 5' -53.1 NC_006552.1 + 11152 0.66 0.86905
Target:  5'- gCCGGACACCUC-C-----AUGAAGUCg -3'
miRNA:   3'- -GGCCUGUGGGGcGcuaguUACUUCAG- -5'
30803 5' -53.1 NC_006552.1 + 29739 0.67 0.844232
Target:  5'- cCCGGGCAUCgCGCGAgagcagCGGUGGc--- -3'
miRNA:   3'- -GGCCUGUGGgGCGCUa-----GUUACUucag -5'
30803 5' -53.1 NC_006552.1 + 41832 0.67 0.817436
Target:  5'- uCUGGGCAUCCaggguGCGGcUCGGcauUGggGUCg -3'
miRNA:   3'- -GGCCUGUGGGg----CGCU-AGUU---ACuuCAG- -5'
30803 5' -53.1 NC_006552.1 + 11771 0.68 0.798594
Target:  5'- cUCGG-CAUCCuCGCGGcUCu-UGAAGUCg -3'
miRNA:   3'- -GGCCuGUGGG-GCGCU-AGuuACUUCAG- -5'
30803 5' -53.1 NC_006552.1 + 38955 0.68 0.787932
Target:  5'- gCCGGACGCCagCGCGAUguuGUGcgccagguuguucGGGUCg -3'
miRNA:   3'- -GGCCUGUGGg-GCGCUAgu-UAC-------------UUCAG- -5'
30803 5' -53.1 NC_006552.1 + 23704 0.68 0.769068
Target:  5'- cCCuGAUGCUgCGCGAUCGGggGAAGUUc -3'
miRNA:   3'- -GGcCUGUGGgGCGCUAGUUa-CUUCAG- -5'
30803 5' -53.1 NC_006552.1 + 48346 0.69 0.717222
Target:  5'- uCCGcAUACCCCGCcggCAccGAGGUCg -3'
miRNA:   3'- -GGCcUGUGGGGCGcuaGUuaCUUCAG- -5'
30803 5' -53.1 NC_006552.1 + 47890 0.69 0.717222
Target:  5'- -aGGGCACCggCCGCGuggCGGUGAguaccuGGUCg -3'
miRNA:   3'- ggCCUGUGG--GGCGCua-GUUACU------UCAG- -5'
30803 5' -53.1 NC_006552.1 + 60915 0.69 0.706557
Target:  5'- gCGGACGaggauaUCCGCGAUCuuAUGGAGg- -3'
miRNA:   3'- gGCCUGUg-----GGGCGCUAGu-UACUUCag -5'
30803 5' -53.1 NC_006552.1 + 42810 0.7 0.652377
Target:  5'- gCCGGGCuucaACCCCGUGAguUCGAccaGGGUCu -3'
miRNA:   3'- -GGCCUG----UGGGGCGCU--AGUUac-UUCAG- -5'
30803 5' -53.1 NC_006552.1 + 33243 0.73 0.522623
Target:  5'- uCCGGGCACUCgGCGAaCGGUGgcGcCa -3'
miRNA:   3'- -GGCCUGUGGGgCGCUaGUUACuuCaG- -5'
30803 5' -53.1 NC_006552.1 + 9172 0.76 0.359793
Target:  5'- cUCGcGGCAUCCgCGCGAUCcGUGAAGUa -3'
miRNA:   3'- -GGC-CUGUGGG-GCGCUAGuUACUUCAg -5'
30803 5' -53.1 NC_006552.1 + 6654 1.13 0.001309
Target:  5'- cCCGGACACCCCGCGAUCAAUGAAGUCg -3'
miRNA:   3'- -GGCCUGUGGGGCGCUAGUUACUUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.